Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1765 ATGCATGCTGTCGAGCTTTTGTTACTTTGTGACAAATGGAGGGTCCTTAGTTCTGTTTCTCTCTCTTCTCTCTCTGCTCTCAACCAAACTCAGCTCTCAAATCACTCTTCTTCTTCACTTCACCCTTCTGATCTGCTATTTTTCAAGCCACTGTTAGGCATAGTGGAAGAGGAAGGTCAAAGCAATGTCACTTTGTTGGTTTCCTCCTCAGCCACCATGGAAAGTGTGTGCATCAACAGCTCAAAATTGAAAGAGCGCAACTACATGGGGCTATCTGATTGTTCATCTGTGGACAGCTCCGTGCCGTCCTTCTCGGATGAGACTAAAACTAATCTGAACCTTAAGGCTACTGAGCTCAGACTGGGTCTTCCGGGATCGCAGTCTCCTGAACGAGATTCTTCAGATCTTTGCTTGAGAAGTTCAATTCAGTTTGATGAGAAGCCGCTGTTTCCTTTGCATCCTGCTACTGATGATCACCACTCCTCATCAAAGCCTGCTGAGAAATTGCTTGTGAATTCTGATGTCAACACAATATTGTCACCCAGGCCTTCTCCTAATGTGGGATTGAAACCAACCTCTATGCTTGAGAATGTTGGGACCCAGCAAGCCAAGGCCAAAGAACTCGCGACAGCAAAGGTTGCTGTCAATGAAAGTGGACCAAATCTTAATGGTTCTGCTAATAACAATAGCAGTGCACCAGCTACCAAGGCACAGGTTGTTGGTTGGCCTCCTATAAGGTCATTTAGGAAAAATTCATTGGCCACTACTTCAAAGAATGTTGAAGAAGTGGATGGAAAATCAGGGCCGGGTGCACTGTTTGTAAAGGTCAGCATGGATGGTGCTCCATATTTAAGAAAAGTAGACTTGAAGAATTACTCTGCATATACTGACCTATCTTCTGCGCTGGAGAATATGTTCAGCTGTTTTACCATAGGTCCTTGTGGATCTCATGGAAATCTGGGAGGGGAGGTGCTGAATGAAACCAAGCTGAAGGATCTGCTTCATGGATCAGAATACGTTCTTACATACGAGGATAAAGATGGCGACTGGATGCTAGTGGGAGATGTTCCATGGGAGATGTTTATTGAGACGTGCAGGAGGCTAAGGATCATGAAGAGCTCTGATGCCATTGGTCTAGCACCAAGAGCTGTTGAAAAAAGCAAGAGCAGGAACTAG 1176 0.4507 MHAVELLLLCDKWRVLSSVSLSSLSALNQTQLSNHSSSSLHPSDLLFFKPLLGIVEEEGQSNVTLLVSSSATMESVCINSSKLKERNYMGLSDCSSVDSSVPSFSDETKTNLNLKATELRLGLPGSQSPERDSSDLCLRSSIQFDEKPLFPLHPATDDHHSSSKPAEKLLVNSDVNTILSPRPSPNVGLKPTSMLENVGTQQAKAKELATAKVAVNESGPNLNGSANNNSSAPATKAQVVGWPPIRSFRKNSLATTSKNVEEVDGKSGPGALFVKVSMDGAPYLRKVDLKNYSAYTDLSSALENMFSCFTIGPCGSHGNLGGEVLNETKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIETCRRLRIMKSSDAIGLAPRAVEKSKSRN 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1765 391 PANTHER AUXIN-INDUCED PROTEIN 192 385 - -
Aed3g1765 391 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 192 385 IPR003311 GO:0005634|GO:0006355
Aed3g1765 391 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 69 166 IPR003311 GO:0005634|GO:0006355
Aed3g1765 391 SUPERFAMILY CAD & PB1 domains 269 372 - -
Aed3g1765 391 Gene3D - 267 385 - -
Aed3g1765 391 PANTHER AUXIN-INDUCED PROTEIN 69 166 - -
Aed3g1765 391 Pfam AUX/IAA family 117 382 IPR033389 -
Aed3g1765 391 ProSiteProfiles PB1 domain profile. 271 373 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1765 Aed-Chr3 22264201 22268437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1765 274 382 B3 DNA Binding Superfamily AT1G59750 30.275 6.24e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Aed3g1765 AUX_IAA 1.1e-86 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1765 K14484 - gmx:100818881 584.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1765 3 22264201 22268437 Aed3g1765 3 22264201 22268437 ECH