Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1762 ATGGAACTCCATGACCATGATTTCTTGGAGGAATTAATGTCTCTAAGAAGAGAACCATCATGGGATACCAATAATCCATGTTCACAAGAAAACCAGCTTTTTTTCTCTAATGGCTGGGATTTTGATAATTGTTTTGATCATCAAAACTATCAAGCTTTTCCTCCAAACTCTTTCTCTTGCCAACAAGAAGTTCCTCAAAGTTACAACAACAACAACAACAGCAACAGCTACAATGAAATCTATAGTTCCTTTCTTGAAGAATTCTCAGCACCCCAAATTGTTGATTCATCATCCTGCAACACCCTTGATACTACTACTACTCCATTTCTGGCTCAAGAGGATTATTATCCTTTGTCCATGATGGAAGATGATCAAGATCCAGGTTTTCTTGGGGAAGAGCTTCATTGTTTGGACCTTCAAGAAGCCACAATATGCAAAATGGAGCAGAGCCATTCCCCTAATGATGAAATGCCTATTTTCAACACAGATTCATCATGTGTTGTGGAGAGAAACAATATTAGATCAAAGAAGAAGCTTCAGGGGCAGCCATCAAAGAACCTTATGGCAGAGAGAAGAAGAAGAAAGAGAGTAAATGACAGGCTCTCCATGCTAAGATCAATTGTCCCTAAGATAAGTAAGTTTGATGTGGAGAGGAGAAATGTCAGTACAAGGGTGGAGATCTGCTGTGCAGGGAAGCCAGGCATGTTGCTGTCTACAGTAAACACCTTGGAAACGTTAGGCCTCGAGATCCAACAATGCGTTATTAGCTGCTTCAATGATTTCACAGTGCAAGCTTCTTGCTCAGAGGAATTGCAGCAGAAGACAATTCTGAGTTCCGAAGATATAAAGCAAGCACTATTTAGAAGCGCAGGATATGGAGGACGATGTTTGTGA 894 0.4049 MELHDHDFLEELMSLRREPSWDTNNPCSQENQLFFSNGWDFDNCFDHQNYQAFPPNSFSCQQEVPQSYNNNNNSNSYNEIYSSFLEEFSAPQIVDSSSCNTLDTTTTPFLAQEDYYPLSMMEDDQDPGFLGEELHCLDLQEATICKMEQSHSPNDEMPIFNTDSSCVVERNNIRSKKKLQGQPSKNLMAERRRRKRVNDRLSMLRSIVPKISKFDVERRNVSTRVEICCAGKPGMLLSTVNTLETLGLEIQQCVISCFNDFTVQASCSEELQQKTILSSEDIKQALFRSAGYGGRCL 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1762 297 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 213 297 - -
Aed3g1762 297 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 181 246 IPR011598 GO:0046983
Aed3g1762 297 CDD ACT_UUR-ACR-like 223 286 - -
Aed3g1762 297 PANTHER DNA BINDING PROTEIN 213 297 - -
Aed3g1762 297 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 3 215 - -
Aed3g1762 297 PANTHER DNA BINDING PROTEIN 3 215 - -
Aed3g1762 297 Pfam Helix-loop-helix DNA-binding domain 187 243 IPR011598 GO:0046983
Aed3g1762 297 Gene3D - 170 247 IPR036638 GO:0046983
Aed3g1762 297 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 184 213 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1762 Aed-Chr3 22217226 22220085 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1762 167 297 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 49.180 2.41e-46 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed3g1762 HLH 2.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1762 - - gmx:100814388 428.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1762 3 22217226 22220085 Aed3g1762 3 22217226 22220085 ECH