Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1749 ATGGCCTCACAAGGAGTGAAGTTGCGTCTCGATGACAATCTAGTGGTTATGGACAATGGCAAACTGCAAGTGTATTTGTCCAATCCAGGTGGATTTGTTACAAGAATGCAGTATAATGGCATTGAGAATATTCTTGAAACTCTTAACGAAGAGGATAATAGAGGGTACTGGGATGTTGTTTGGAGTGAAGCTGGAAGTACAGGAACAACTGGGACATTTGAACGGATTGTAGGAACAAGCTTCAATGTTATAACGGAAAACGAGGAACATGTTGAAATCTCATTCACAAGTCAGTGGGATCCATCTCTGAAGGGAAAGAGAGCACCTCTTAATATTGACAAAAGGTATGTGATGCTTCGTAATTCCTCAGGATTCTACTCTTATGCCATCTTTGAACACCTACCAGAGTGGCCTGCTTTCAACATACCTCAAATAAGAATGGTTTACAAGCTTCGAAAAGACAAGTTTCAATACATGGCCGTGTCGGATGATAGACAAAGATTTATGCCTCTCCCAGACGATAGATTACCCAACAGAGGAAAAGAATTAGTTCCGCCGGAGGCAGTTTTGCTCGTTAATCCAGTGGAACCAGAGTTTAAGGGAGAGGTGGATGACAAGTATCAATACTCAAGTGAGAACAAAGATCTTAAGGTTCATGGGTGGATAAGTTCTCAATCCGAAGATGATTCAGCAATGGGGTTTTGGGTAATCATACCCAGCAATGAGTTCCGATCAGGTGGCCCAGTTAAGCAGAACCTTACTTCCCATGTAGGCCCAATAAGCCTCTCTGTAAGAGAGGATATAGTTTTGAAACTCCAGCCTAATGAGCCATGGAAGAAAGTTTTTGGACCAACTTTTGTTTATCTTAACACTTTGTTAGATGGTGATGATGACCCGCTAGAACTCTGGGAGGACGCTAAGTGTCAGACGAACGAGGAGGTTCAATGTTGGCCCTATGATTTTCCAGCTTCAGAAGATTTTCAAAAATCTAGCCAACGGGGCAGTTTGTGTGGCACATTACTAGTTCGAGACAGGTGTATAAGTGGCGAGAACATAATAGCAGAAGGCGCATACGTAGGAGTAGCACCACCAGGAGAAGCTGGATCCTGGCAAAGAGAATGCAAGGGATACCAATTTTGGACTAAAACAAATGAGGAAGGTTGCTTCTCAATCAATAATATACGAAGTGGGGATTACAATCTCAACGCATGGGTTCCAGGTTTCATTGGAGAATATTGGAACAATGCTGTTCTCACCATAACACCAGGTTGTGAAATAAACGTTGGTGAGATTATTTATGAGCCACCAAGAGATGGCCCAACATTATGGGAGATAGGCACTCCTGATCGCTCTGCTACTGGATTCTATGTTCCTGATCCCAATCCCAACTACATTAACAAGCTTTTTGTTGACCATCCAGACAAGCAGTTTGGCTTGTGGGAAAGGTATGCAGATTTATACCCAAATGAAGATTTAACTTATACAGTGGGTGCCAGTGACTACACAAAAGATTGGTTCTTTGCACAGGTCACCAGGAAGCAAGAAGATGGAAGTTACCAAGGAACAACATGGCAAATTAAGTTCAACCTTGATGATGTGGATGCAAGTAATGAAATCTACAAACTAAGGTTGGCACTTGCAAGTGCAAATGTCTCCGAATTACAGGTTAGAGTGAATGATCCAACACAAGATCCTCCTCTGTTTACTACGGGAGTGATTGGGAAGGACAATGCAATAGCAAGACATGGAATTCACGGACTCTACTGGCTATTCAACATTGATGTGCCTGCTCTTCTACTAGAGAATGGTGTTAATACTATATTTCTAACACAGACTATGGCTAGTGGCCCCTTGGCACTCTTTCAGGGGATAATGTACGACTATATTCGCCTAGAAGGTCCTAACCCCTTATCTCTCATAAAACAAATATGA 1932 0.4234 MASQGVKLRLDDNLVVMDNGKLQVYLSNPGGFVTRMQYNGIENILETLNEEDNRGYWDVVWSEAGSTGTTGTFERIVGTSFNVITENEEHVEISFTSQWDPSLKGKRAPLNIDKRYVMLRNSSGFYSYAIFEHLPEWPAFNIPQIRMVYKLRKDKFQYMAVSDDRQRFMPLPDDRLPNRGKELVPPEAVLLVNPVEPEFKGEVDDKYQYSSENKDLKVHGWISSQSEDDSAMGFWVIIPSNEFRSGGPVKQNLTSHVGPISLSVREDIVLKLQPNEPWKKVFGPTFVYLNTLLDGDDDPLELWEDAKCQTNEEVQCWPYDFPASEDFQKSSQRGSLCGTLLVRDRCISGENIIAEGAYVGVAPPGEAGSWQRECKGYQFWTKTNEEGCFSINNIRSGDYNLNAWVPGFIGEYWNNAVLTITPGCEINVGEIIYEPPRDGPTLWEIGTPDRSATGFYVPDPNPNYINKLFVDHPDKQFGLWERYADLYPNEDLTYTVGASDYTKDWFFAQVTRKQEDGSYQGTTWQIKFNLDDVDASNEIYKLRLALASANVSELQVRVNDPTQDPPLFTTGVIGKDNAIARHGIHGLYWLFNIDVPALLLENGVNTIFLTQTMASGPLALFQGIMYDYIRLEGPNPLSLIKQI 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1749 643 SUPERFAMILY Galactose mutarotase-like 12 258 IPR011013 GO:0003824|GO:0005975|GO:0030246
Aed3g1749 643 Pfam Polysaccharide lyase family 4, domain II 355 427 IPR029413 -
Aed3g1749 643 PANTHER LG27/30-LIKE GENE 2 636 - -
Aed3g1749 643 CDD RGL4_C 443 632 - -
Aed3g1749 643 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 2 636 - -
Aed3g1749 643 CDD RGL4_N 6 299 - -
Aed3g1749 643 SUPERFAMILY Galactose-binding domain-like 438 632 IPR008979 -
Aed3g1749 643 Gene3D - 439 632 - -
Aed3g1749 643 Pfam Polysaccharide lyase family 4, domain III 441 631 IPR029411 -
Aed3g1749 643 CDD RGL4_M 332 431 IPR029413 -
Aed3g1749 643 Pfam Rhamnogalacturonate lyase family 5 203 IPR010325 -
Aed3g1749 643 SUPERFAMILY Starch-binding domain-like 331 429 IPR013784 GO:0030246
Aed3g1749 643 Gene3D - 329 428 - -
Aed3g1749 643 Gene3D - 6 267 IPR014718 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1749 Aed-Chr3 22100633 22105469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1749 6 635 Polysaccharide Lyase AT1G09890 61.622 0.0 810
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1749 K18195 - gmx:100815677 1169.07