Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1741 ATGGAGCCATCAGCAATGTACGGACACTCCCAGCCCCTGAACATGCCCCCGCAGATCGTCGCCGGCGAAAGCGACGACGGCTCCGGCAACGAACCCGCCGTCGACGGCCACCACCACATTCAGTACGAAACGCACGCTCTCGACGACGGTGCCGCCGTGGTCGTCGAGGATGTTACCTCGGATGCGGTCTATGTCTCCGGCGGTGGAGGCCCCGAAGAGTCCAGCCAGCTTACGCTTTCGTTTCGTGGCCAAGTTTACGTCTTCGATGCCGTTACGCCTGATAAGGTTCAAGCGGTGTTGTTACTGTTAGGTGGATGTGAACTATCTTCAGGTGGTTCTCCATGCGTGGATGCGGCAGCTCAACAGAATCAGAGGGGTTCAATGGAATTTCCAAAATGTAGTCTACCACAGCGAGCTGCCTCGTTAGATAGGTTCAGGCAGAAGAGGAAAGAGCGATGCTTTGATAAAAAAGTGAGATATAGCGTACGGCAAGAAGTTGCGCTCAGGATGCACCGAAATAAGGGTCAGTTCACTTCATCTAAGAAACAAGATGGAGCTAATAGTTATGGTACAGACCAAGATTCAGGACAGGATGATAATCCATCAGAAACCTCGTGCACACATTGTGGCACTAGTTCAAAATCCACCCCAATGATGCGGCGAGGGCCATCTGGGCCAAGGTCACTTTGCAATGCTTGTGGGCTTTTTTGGGCAAATAGGGGTGCTTTGAGAGACCTTTCTAAGAGAAATCAGGAACACTCTCTTCCACCAGTTGAGCATATTGATGAGGGTAATGACTCAGACTGTCGGACTGCCACCGCCGCTGACCCTGCACATAACAATCTTGCTGCTTTCTCAGAGCATGATAATCCAGCTTTGGTAGCTGATCGTAAAGTTTTCCAGTCTCAGAAAATGCTGGAGTAG 924 0.513 MEPSAMYGHSQPLNMPPQIVAGESDDGSGNEPAVDGHHHIQYETHALDDGAAVVVEDVTSDAVYVSGGGGPEESSQLTLSFRGQVYVFDAVTPDKVQAVLLLLGGCELSSGGSPCVDAAAQQNQRGSMEFPKCSLPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKKQDGANSYGTDQDSGQDDNPSETSCTHCGTSSKSTPMMRRGPSGPRSLCNACGLFWANRGALRDLSKRNQEHSLPPVEHIDEGNDSDCRTATAADPAHNNLAAFSEHDNPALVADRKVFQSQKMLE 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1741 307 MobiDBLite consensus disorder prediction 1 35 - -
Aed3g1741 307 ProSitePatterns GATA-type zinc finger domain. 206 233 IPR000679 GO:0006355|GO:0043565
Aed3g1741 307 ProSiteProfiles GATA-type zinc finger domain profile. 200 251 IPR000679 GO:0006355|GO:0043565
Aed3g1741 307 MobiDBLite consensus disorder prediction 179 219 - -
Aed3g1741 307 ProSiteProfiles Tify domain profile. 70 105 IPR010399 -
Aed3g1741 307 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 202 254 - -
Aed3g1741 307 Pfam tify domain 71 104 IPR010399 -
Aed3g1741 307 MobiDBLite consensus disorder prediction 171 224 - -
Aed3g1741 307 Pfam CCT motif 138 180 IPR010402 GO:0005515
Aed3g1741 307 PANTHER GATA TRANSCRIPTION FACTOR 25 6 273 - -
Aed3g1741 307 PANTHER GATA TRANSCRIPTION FACTOR 28 6 273 IPR045280 GO:0006355
Aed3g1741 307 ProSiteProfiles CCT domain profile. 138 180 IPR010402 GO:0005515
Aed3g1741 307 Pfam GATA zinc finger 206 241 IPR000679 GO:0006355|GO:0043565
Aed3g1741 307 Gene3D - 196 254 IPR013088 GO:0006355|GO:0008270
Aed3g1741 307 SMART tify_2 70 105 IPR010399 -
Aed3g1741 307 SMART GATA_3 200 253 IPR000679 GO:0006355|GO:0043565
Aed3g1741 307 CDD ZnF_GATA 205 251 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1741 Aed-Chr3 22022948 22027582 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1741 71 296 Tify Gene Family AT4G24470 59.414 4.04e-90 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Aed3g1741 CCT 2.3e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1741 - - gmx:100810269 570.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1741 3 22022948 22027582 Aed3g1741 3 22022948 22027582 ECH
Aed3g1741 3 22022948 22027582 Aed10g0156 10 1210921 1214396 PCT