Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1734 ATGAAAAAGCATCAAAGTAAGGTTCTTCTCAGTGAAGATGATGCTGGTGTTCTATTACAAAGGTATGACACAGAAACGGTTTTGACTGTACTTCAGGAGTTGGCGAATTATCCGCACTCGAAGTTCGACTGGAACGATTTGGTGGCCAAAACTTCAACCGGAATTTCCAATGCCAGAGAGTATCAAATGCTGTGGCGTCATCTTGCGTACGGTCACTCCTTTGACGAACATTTCGACTGCCGTGATAATCAACCATTGGATGATGATAGTGACTTAGAGTGTGAACGAGAAGCATTGCCCCGCCCAAACAAGGAAACTGCAATAGATGCTTCAGCATATGTGAAGGTAATGATTGCATCTTATAAACTGAGTGAATCCACCCCTACTAGCCCGGTGATTCAGGCTCCATTGAACATAAATGTTCCAGTCTGCAGCAATTCAACTAGAATTGCAAATATGGAAAGTTCACAGCAGCCCTCTAGTTCGGGGACACAAGAGACAACAAACATTATGTTCCCAGTTACGGTCAAGAGACAGGCAGTGCCAAATGTATCATCAATGAGAGCTTTGGAAGCCAGTGGATCAGTGAGTGGCATTGGCAACGCCGCATCCATTAAAAAGAAAAGAGAACCATGGTCTGAGGAAGAGGACTTGCAACTAAGAGCTGCTGTTCAGAGGTGGGGTGAAGGTAATTGGGCAAACATGGCTAAAAGTGATAACTTTCCTATTCAGAGAAGTACCTCACAGTTGTCTAAGGTATTTATTTTTTCAACCTTAAAACTTTTGGACTTGTTTGAGGTGGAGCACATTACGAAAGAGAGAGAGCGACACCAATTAATAAACCATCTCAACAAACTCCGGAACTGA 867 0.4325 MKKHQSKVLLSEDDAGVLLQRYDTETVLTVLQELANYPHSKFDWNDLVAKTSTGISNAREYQMLWRHLAYGHSFDEHFDCRDNQPLDDDSDLECEREALPRPNKETAIDASAYVKVMIASYKLSESTPTSPVIQAPLNINVPVCSNSTRIANMESSQQPSSSGTQETTNIMFPVTVKRQAVPNVSSMRALEASGSVSGIGNAASIKKKREPWSEEEDLQLRAAVQRWGEGNWANMAKSDNFPIQRSTSQLSKVFIFSTLKLLDLFEVEHITKERERHQLINHLNKLRN 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1734 288 Gene3D - 202 255 - -
Aed3g1734 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 204 237 IPR017930 -
Aed3g1734 288 SMART sant 208 261 IPR001005 -
Aed3g1734 288 ProSiteProfiles Myb-like domain profile. 204 249 IPR001005 -
Aed3g1734 288 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 2 252 - -
Aed3g1734 288 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 2 252 - -
Aed3g1734 288 Pfam Myb-like DNA-binding domain 209 249 IPR001005 -
Aed3g1734 288 CDD SANT_TRF 211 251 - -
Aed3g1734 288 SUPERFAMILY Homeodomain-like 206 255 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1734 Aed-Chr3 21955993 21959993 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aed3g1734 Myb_DNA-binding 1.4e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1734 3 21955993 21959993 Aed3g1734 3 21955993 21959993 ECH
Aed3g1734 3 21955993 21959993 Aed10g0148 10 1110016 1123385 PCT