Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1730 ATGACGTCGTACATGGGTGGTGCAACTTCTTTATTCCCCATCTTCGTTCTCACCACCACCCCTTTCATCCTCTGCGACGTCGTTCCAACGGAAGAAACAACCTACGCACCACCGTTTCTCTCAACCGATCAATATTACTATTCCTCTTCTGATCCCTTCAAGCCCGGCACGGCCGTTGTACTTGGCGTGATAACCACTTTCTCTCTCACTTTCCTTTTCCTTCTCTACCTTAAGCAGTGCATGGACCACAACGCCAATGTTAATGCTAGCACGAACACCCAACCCTCGCACGTGCGCAAGAGTTCCGGCGTTGACCGCCATGTTCTCGAGTCGTTACCGGTTTTCAGCTTCGGATCGGAGAAGAAGATGGACGGTCTCGATTGCGCCGTCTGTCTCGGCAGGTTCGAGGATCCTGACGAGGTTTTGAGACTGCTGCCCAAGTGCAAGCACGTTTTCCACGTGGAGTGCGTCGACGCGTGGCTCAGCGCGCACTCCACGTGCCCGCTCTGTCGCTATAGGGTCGGACTTCAACAATCCGACGACGTTGTCAACGATGTTGTCGAGGCCGTCAACAACAACGACGTTGTTGTTCTCGTGGACGACGACGATGACTCCCGAACGTATTCGTCGTCGTCGTCTACGGAAGTAAGTGGCCAAAACGACGATGACGTGGAGACGGCGTCTTTGGATGGCGCGGAGCACCGTATTATTGTGTCGCCGCGGCCTTGTTCGAGTAGCTGTCGCGGTGGGGTACTCCAGCAGCGGTGGAGTGATTTTCAGCAGCGAGATGTGTTGGAGATGGTCACGTGGAAGGCACGTGGAGGTGGTAGCAGTAGTAGTAATATCGTGGTGGGTGAGGTGATGGAGAGATGTCATGCATGTCCAGTTTAG 891 0.5432 MTSYMGGATSLFPIFVLTTTPFILCDVVPTEETTYAPPFLSTDQYYYSSSDPFKPGTAVVLGVITTFSLTFLFLLYLKQCMDHNANVNASTNTQPSHVRKSSGVDRHVLESLPVFSFGSEKKMDGLDCAVCLGRFEDPDEVLRLLPKCKHVFHVECVDAWLSAHSTCPLCRYRVGLQQSDDVVNDVVEAVNNNDVVVLVDDDDDSRTYSSSSSTEVSGQNDDDVETASLDGAEHRIIVSPRPCSSSCRGGVLQQRWSDFQQRDVLEMVTWKARGGGSSSSNIVVGEVMERCHACPV 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1730 296 MobiDBLite consensus disorder prediction 209 224 - -
Aed3g1730 296 PANTHER RING-H2 FINGER PROTEIN ATL43 30 219 - -
Aed3g1730 296 MobiDBLite consensus disorder prediction 203 225 - -
Aed3g1730 296 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 175 IPR013083 -
Aed3g1730 296 CDD RING-H2_EL5_like 127 171 - -
Aed3g1730 296 Pfam Ring finger domain 127 171 IPR001841 -
Aed3g1730 296 SUPERFAMILY RING/U-box 106 177 - -
Aed3g1730 296 SMART ring_2 128 170 IPR001841 -
Aed3g1730 296 ProSiteProfiles Zinc finger RING-type profile. 128 171 IPR001841 -
Aed3g1730 296 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 30 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1730 Aed-Chr3 21916807 21917697 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1730 44 174 C3H Transcription Factor Family AT5G05810 51.351 1.77e-36 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1730 K19041 - vun:114195049 185.652