Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1716 ATGATGTGGGAATGGGACGATTACGAAGACAGCATCCCCAAATCCGACCAACCCCAGCCCGATTCCCACCTCAATTTCGATTTCTTCTCTGCTCTCTCCATACCCAAGGATTATTATAAGATACTGGAAGTGGATTACGACGCTACGGATGACGCTATTCGTTCCAATTACATTCGACTTGCTCTGGTGCGTTGTTGCGTTACTGTTCATTTTTCGTTTTTGTTGGGCTTTCCGATTGGGCCTAACCTGTTGTGCACGCAGAAGTGGCACCCGGACAAGCACAGAGACCAGGATTCTTCTACCTCGCGATTCCAAGACATTAACGAGGCCTATCAGGTTTTGAGTGATCCAGTCAAAAGGAGGGAATATGACATAAATGGGATGCGTTACGAATATGATTACAATATCATTGACTATCTGAACCGTTACAAGGGCCTTATATTGACGTGCAATGGCCTTGGCATAAAGCATTCGATATGGTAA 483 0.4534 MMWEWDDYEDSIPKSDQPQPDSHLNFDFFSALSIPKDYYKILEVDYDATDDAIRSNYIRLALVRCCVTVHFSFLLGFPIGPNLLCTQKWHPDKHRDQDSSTSRFQDINEAYQVLSDPVKRREYDINGMRYEYDYNIIDYLNRYKGLILTCNGLGIKHSIW 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1716 160 Gene3D DnaJ domain 30 139 IPR036869 -
Aed3g1716 160 PRINTS DnaJ domain signature 39 57 IPR001623 -
Aed3g1716 160 PRINTS DnaJ domain signature 82 97 IPR001623 -
Aed3g1716 160 PRINTS DnaJ domain signature 99 119 IPR001623 -
Aed3g1716 160 SMART dnaj_3 36 119 IPR001623 -
Aed3g1716 160 ProSitePatterns Nt-dnaJ domain signature. 104 123 IPR018253 -
Aed3g1716 160 CDD DnaJ 37 116 IPR001623 -
Aed3g1716 160 SUPERFAMILY Chaperone J-domain 35 63 IPR036869 -
Aed3g1716 160 SUPERFAMILY Chaperone J-domain 87 146 IPR036869 -
Aed3g1716 160 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 2 160 - -
Aed3g1716 160 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 2 160 - -
Aed3g1716 160 Pfam DnaJ domain 87 124 IPR001623 -
Aed3g1716 160 ProSiteProfiles dnaJ domain profile. 37 127 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1716 Aed-Chr3 21790661 21794379 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1716 30 124 C2H2 Transcription Factor Family AT1G74250 31.000 2.19e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1716 - - var:108338470 255.758
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1716 3 21790661 21794379 Aed3g1716 3 21790661 21794379 ECH