Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1710 ATGGAATTCGACGAGCAAGAAGAGCATGAGGAGGAGGAAATGGGGATGCCGGAGCCGCCGGTTTCGGCGGCGCCGGGTTACGACTCTCTCGGGAACTTGGCATCGCGGTCGAAAATCGGCGGCGGCGAGGGGCGGAAGAGCGCTTTCGGCGCGGCGGCGGTGCGGTACAGAGAATGCCAGAAGAACCACGCCGTGAGCTTCGGCGGCCACGCCGTCGACGGCTGCTGCGAGTTCATGGCGGCCGGAGAGGACGGCACGCTGGAGGCCGTCATCTGCGCCGCCTGCAACTGCCACCGGAATTTCCACCGCAAGGAGATCGACGGTGAGATGACCTCCTTCCACCACCGCGCGCAGCCGCCGCCGCCGCCGTTGCACCACCACCACCAATTCTCCCCGTATTACCACCGCGTCCCGCAGCATCCCTCTGCCGGCGGCTACCTCCACCACCACCTCGCGACGCCTCCGATGTCGCAGCACCGCCCACTCGCCCTCCCGGCCGCCGCATCAGGCGGTGGCCTCAGCCGTGACGAGGAAGACATGTCAAACCCTAGCAGCAGCGGCGGCGGCGGCGGCGGCGGAGGATCCAGAAAACGGTACCGAACAAAGTTCACACAAGAACAAAAGGATAAGATGCTAGCATTCGCGGAACAACTTATTCTAGTGTTTACAAGGGACTATGATGATTTATTAAAGTGCATAATTAGTTATTATTCTCGTGATTGGTTTATCACTAAAGAGACAGATCCAAAGCGGAGAAAGACAAGACATGCAAATGCAACAAAGGTGATTAAGCTTGGTTTGTACTCCTGCATTAACATCTAA 822 0.59 MEFDEQEEHEEEEMGMPEPPVSAAPGYDSLGNLASRSKIGGGEGRKSAFGAAAVRYRECQKNHAVSFGGHAVDGCCEFMAAGEDGTLEAVICAACNCHRNFHRKEIDGEMTSFHHRAQPPPPPLHHHHQFSPYYHRVPQHPSAGGYLHHHLATPPMSQHRPLALPAAASGGGLSRDEEDMSNPSSSGGGGGGGGSRKRYRTKFTQEQKDKMLAFAEQLILVFTRDYDDLLKCIISYYSRDWFITKETDPKRRKTRHANATKVIKLGLYSCINI 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1710 273 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 56 105 IPR006456 -
Aed3g1710 273 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 46 220 - -
Aed3g1710 273 MobiDBLite consensus disorder prediction 144 198 - -
Aed3g1710 273 Pfam ZF-HD protein dimerisation region 54 106 IPR006456 -
Aed3g1710 273 Gene3D - 181 233 - -
Aed3g1710 273 MobiDBLite consensus disorder prediction 1 44 - -
Aed3g1710 273 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 46 220 - -
Aed3g1710 273 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 55 106 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1710 Aed-Chr3 21711078 21712301 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1710 1 218 ZF-HD Transcription Factor Family AT4G24660 50.917 3.32e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Aed3g1710 ZF-HD_dimer 7.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1710 - - gmx:100776421 350.517
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1710 3 21711078 21712301 Aed3g1710 3 21711078 21712301 ECH
Aed3g1710 3 21711078 21712301 Aed10g0127 10 972745 975043 PCT