Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1698 ATGTGCATCCACACGGAATGCGCTGCACCTGCACCACTGGATCATGTTCGTGTAAGTTTTGTTTTTCTTCTTCTCTTTCTGTTGCCGTCAGTCATCACGGCACAGTTACAAAACTCGCCGCCGCCGCCGCCGCAGTTGGATCCATTCACGAGGCTGAGGTTCGACAAGACCATGGCCGCAGTTCTGGTGATCCTCGTGGTGGTTTTCTTCGCGTTGGGGTTCGTGTCGATCTACACGCGGCAATGCGCGGAGCGGAGGATCAGGGGGAGGCTGGATCTCGCCGTGGCGATCGCCGGCGGGATGGAGCGGCGGCAGCACCACGGCCTCGACGCGGCTGTGGTCGACACGTTCCCGACCTTCGTCTACTCCGAGGTCAAGGCGCTGAAGATCGGGAGGGCCACGCTGGAATGCGCCGTGTGCCTCAACGAGTTCCGCGACGACGAAACGCTGCGTTTGATCCCCATGTGCTGCCACGTGTTCCACCCCGACTGCATCGACGCGTGGTTGGTGAATCACTCTACCTGTCCCGTTTGCCGAGCCAACCTCGCGCCCAAGCCCGAGGACGCGTTTCCTTCTGTTGAGATTCAGATTCCAGATCCGGCCCGGTCCATTGGGCCCAACGCAGAGCCCGGTCATGATCCGAATTACATCAACCCGGTGGAAGAGCGTGAAGCTGAATCAAATAGAATTATTACGGAGTCTACGAGTGTGGGTTTAGATGATCAGAACCGCCCTAGACCGGTTCGGTCTAGATCAACCGGGTTTGGAATTGCGAAGCTCTTTCCTCGCTCTCACTCGACGGGTCACTCGTTGGTTCGACCGGGAGTGGATTGCGAGCGGTTCACGTTGCGGTTGCCGGAGGAGGTGCAGAACCGGCTCGTGACATCAGCAACGACGCTGAACCGGACAAAGAGTTGCGGGGTGACGACGTGGCAGCGGGAGAGCAGTGGGAGGAGTGGTTACAGGACTAGAAGTGTAGGGAGGTACGAGCGATTCGGTGGGGAGAGCCGGTTGGACCGGTGGGGGTTCATGTGGACCCCACCGTTTTGGGGTAATAGGACCGGTTCGAGTACTACGAGGGTGAAGCATGAAGTTGACGTGGGAGAACGTTCCTCTGATCGTTTGTTTTCCAAGGATTGA 1140 0.5833 MCIHTECAAPAPLDHVRVSFVFLLLFLLPSVITAQLQNSPPPPPQLDPFTRLRFDKTMAAVLVILVVVFFALGFVSIYTRQCAERRIRGRLDLAVAIAGGMERRQHHGLDAAVVDTFPTFVYSEVKALKIGRATLECAVCLNEFRDDETLRLIPMCCHVFHPDCIDAWLVNHSTCPVCRANLAPKPEDAFPSVEIQIPDPARSIGPNAEPGHDPNYINPVEEREAESNRIITESTSVGLDDQNRPRPVRSRSTGFGIAKLFPRSHSTGHSLVRPGVDCERFTLRLPEEVQNRLVTSATTLNRTKSCGVTTWQRESSGRSGYRTRSVGRYERFGGESRLDRWGFMWTPPFWGNRTGSSTTRVKHEVDVGERSSDRLFSKD 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1698 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 185 IPR013083 -
Aed3g1698 379 CDD RING-H2_PA-TM-RING 136 179 - -
Aed3g1698 379 ProSiteProfiles Zinc finger RING-type profile. 137 179 IPR001841 -
Aed3g1698 379 MobiDBLite consensus disorder prediction 356 379 - -
Aed3g1698 379 MobiDBLite consensus disorder prediction 359 379 - -
Aed3g1698 379 PANTHER RING-H2 FINGER PROTEIN ATL11 18 313 - -
Aed3g1698 379 SUPERFAMILY RING/U-box 120 185 - -
Aed3g1698 379 SMART ring_2 137 178 IPR001841 -
Aed3g1698 379 Pfam Ring finger domain 136 179 IPR001841 -
Aed3g1698 379 PANTHER RING FINGER DOMAIN-CONTAINING 18 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1698 Aed-Chr3 21632039 21633178 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1698 14 357 Rapid Response to Elicitors AT3G05200 40.997 5.06e-65 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1698 K10664 - gmx:100815982 582.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1698 3 21632039 21633178 Aed10g0174 10 1381761 1382762 PCT