Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1697 ATGAGACACCACGGTTTCGACCAAGGCCATGCATATACATGGCTAGCTCTATTGCACCTTCTCATTCACATCTCACCGGCAGTAACCGGTCAGCCTGTAATCCCGCCGGTGCAACCTGATAGCAACAGATCCGTTGTCACCATCATGATCATCATCGCCTTCATGTTCCTCATCTCGGCCTTCCTCTCCCTCTACTCCCGCAAGTGCTCCGACCGGCATCTCCAGCTACGCGGCCCCCTCGACCTCGCGGCACCGACCGGCACAGCCGGTAACCCGTCACCAACCGAAAACAACGGCATCAACCAAGCCACCATAGAGACGTTCCCCACGTTCCTCTACTCCGACGTGAAGGGTCTTAAAATCGGTAAAGACACGCTTGCATGCGCTGTGTGCTTGAGCGAGTTCGAAGACAGCGAGATTCTCCGCATGATCCCGAAATGCTGCCACGTGTACCACCCCGGTTGCATTGATGTTTGGTTAGCGTCTCACTCCACGTGTCCGGTTTGTCGCGCCGACCTTATTCCACAACCAGAAGACATAAACATGCCTCCAACGTTGTCCATTCAGATACCTAATGAACAAGAACATGAACATGAACAAGCACACGGGACTAGTGTTGTTAGTGAGGAACTGCATAAGAGAGAGATAGAGGTGGAATCACCACCGAAGGTGGATTTGCTTCAGCGGATTCGGACGTTGCATCAGAGCCGTCCAACGCGGTCGAGATCGACGGGGTTCATGTCTTCACTTTTGTTTGGGAGATCGAAGTCGATGGGGCAATTGGCGCAGCCTTCTGGGGAGAACTACGAGAGGTTTACGCTGCGGTTACCGGAGGAGGTGCAGAGCCAGATGGCATCGACGGCGGCGCTAAAGCGTGCGAATAGCGCCGTGTGCTTCACGAGGATGAGCAGTGGCACGTGGGGGTATAGGACCAGAAGCATGGGAAGAGGACGTGTGCAGTACGAGAGAAGAAGCTCGCGCGCCATCTTCGATCAGATCCCTTCCCCCCGGCCCCACATCTCCCTCTACACCGTAATGCTCCATGCTTACGCACAAAACCACAGACTCCGCGAAGCTATCAACCTCAAGTTGGAGAAGGAATATGGAATGGAGGAGACAGAGTGGGGTTGGTGCAAAAGAAGAAGGTTTGATGTTTGGGCTGGTGGTGCTACCCTGGGATAA 1182 0.5431 MRHHGFDQGHAYTWLALLHLLIHISPAVTGQPVIPPVQPDSNRSVVTIMIIIAFMFLISAFLSLYSRKCSDRHLQLRGPLDLAAPTGTAGNPSPTENNGINQATIETFPTFLYSDVKGLKIGKDTLACAVCLSEFEDSEILRMIPKCCHVYHPGCIDVWLASHSTCPVCRADLIPQPEDINMPPTLSIQIPNEQEHEHEQAHGTSVVSEELHKREIEVESPPKVDLLQRIRTLHQSRPTRSRSTGFMSSLLFGRSKSMGQLAQPSGENYERFTLRLPEEVQSQMASTAALKRANSAVCFTRMSSGTWGYRTRSMGRGRVQYERRSSRAIFDQIPSPRPHISLYTVMLHAYAQNHRLREAINLKLEKEYGMEETEWGWCKRRRFDVWAGGATLG 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1697 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 175 IPR013083 -
Aed3g1697 393 ProSiteProfiles Zinc finger RING-type profile. 128 170 IPR001841 -
Aed3g1697 393 PANTHER RING FINGER DOMAIN-CONTAINING 2 317 - -
Aed3g1697 393 Pfam Ring finger domain 127 170 IPR001841 -
Aed3g1697 393 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 2 317 - -
Aed3g1697 393 CDD RING-H2_EL5_like 128 170 - -
Aed3g1697 393 SUPERFAMILY RING/U-box 122 183 - -
Aed3g1697 393 SMART ring_2 128 169 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1697 Aed-Chr3 21627637 21629581 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1697 46 335 Rapid Response to Elicitors AT3G05200 36.789 1.51e-46 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1697 K10664 - gmx:100814384 494.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1697 3 21627637 21629581 Aed3g1697 3 21627637 21629581 ECH