Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1696 ATGGCCCTAGAGGCCGTGGTTTTCCCACAAGATCCATTCACTTACGGTTGCAACAATAACAAAGACTTCTTGTACTCGTTAGTAGGAGGAGGAGTTGAAATCAACAACAACACAGAGCACACTCTGCATGCAAATTGGGATTCATCTTCTCCTTCGCTGTTGCAAAGTGTCAAAGACCAATGGGATTCGCACTCCTCCCCTGAACCCTGCACCGTCGATCAATCCCTCCCCGGAGCCTTCCCTCCTCCTCCTTCCTCAGCCGCCGAAGGCGGCGCTACCACCACGGGCCGCCGCAAACGACGTCGCACCAAAAGCGCGAAGAACAAGGAGGAGATCGAGAACCAGAGAATGACACACATTGCAGTTGAGCGCAACAGAAGGAAACAGATGAACGAGTACCTCGCCGTGCTTAGATCCTTGATGCCTCCCTCTTATGTACAAAGGGGGGATCAAGCATCAATAATTGGTGGCGCCATTAACTTCGTGAAGGAGCTGGAGCAGCTTGTGCAGTGCATGAAGGGAGAAAAGAGAACAAAGCAGCAGGAAGGAGAGTTCTCTGACTCATCACCCTTTGCTGAGTTCTTCATGTTCCCCCAGTACTCGACACGTGCGACACAGAGCAGAAGTAGCAGCAGCAGAGGCTACTACCCTGGCACGTGCGAGGCGAACAACAACAACATCGGAGCAGCACAGAACAACCATTCATGGGCCGTGGCGGACATAGAAGTGACCTTGGTGGATGGGCATGCCAACATGAAGATACTCTCGAAGAAACGACCAGGGTTGCTCTTGAAGATGGTCGTTGGACTTCAGAGTCTCGGTCTCACCATTCTCCACCTTAATGTTACCACTGTTGACGATATGGTCCTTACCTCAGTTAGTGTTAAGGTAGAGGAAGGGTGTCAGCTGAACACGGTGGATGAAATCGCAGCTGCTGTGCATCAATTATCACGCACGGTTCAAGAGGAACCTGTTTTCAGCTGA 984 0.5142 MALEAVVFPQDPFTYGCNNNKDFLYSLVGGGVEINNNTEHTLHANWDSSSPSLLQSVKDQWDSHSSPEPCTVDQSLPGAFPPPPSSAAEGGATTTGRRKRRRTKSAKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPSYVQRGDQASIIGGAINFVKELEQLVQCMKGEKRTKQQEGEFSDSSPFAEFFMFPQYSTRATQSRSSSSRGYYPGTCEANNNNIGAAQNNHSWAVADIEVTLVDGHANMKILSKKRPGLLLKMVVGLQSLGLTILHLNVTTVDDMVLTSVSVKVEEGCQLNTVDEIAAAVHQLSRTVQEEPVFS 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1696 327 MobiDBLite consensus disorder prediction 51 112 - -
Aed3g1696 327 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 114 182 IPR036638 GO:0046983
Aed3g1696 327 CDD bHLH_AtFAMA_like 117 190 - -
Aed3g1696 327 Gene3D - 103 182 IPR036638 GO:0046983
Aed3g1696 327 Coils Coil 162 182 - -
Aed3g1696 327 Pfam Helix-loop-helix DNA-binding domain 115 166 IPR011598 GO:0046983
Aed3g1696 327 MobiDBLite consensus disorder prediction 51 72 - -
Aed3g1696 327 CDD ACT_UUR-ACR-like 252 316 - -
Aed3g1696 327 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 114 165 IPR011598 GO:0046983
Aed3g1696 327 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 325 - -
Aed3g1696 327 PANTHER MAX DIMERIZATION, MAD 1 325 - -
Aed3g1696 327 SMART finulus 120 171 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1696 Aed-Chr3 21612011 21614221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1696 1 297 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 47.112 1.71e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed3g1696 HLH 6.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1696 - - gmx:100797856 510.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1696 3 21612011 21614221 Aed3g1696 3 21612011 21614221 ECH
Aed3g1696 3 21612011 21614221 Aed10g0175 10 1394046 1395161 PCT