Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1666 ATGGATAAAGAAGAAGATGTGAACCATGGTGATGATTATAAACATGACATAGAAAATGAAGGTCTGTTGTATGGGAATGAGGAAATTGGAAGGTACTGGTCAGAGTTATCTGACAGAAACATGGCTTATACAGAGCCACTTCTTGTGAAGAGGATTAACACCACCTCCCAGATTGCTTTAGTTGGTGCCAACCTCTGCCCTATTGAAAGCCTTGACTATGAATATCTTGAGGCTTTTTTAGCATATGCTGGTTTAAACATATGTTTAGCAGCAGCAGCTGCTGCACTTTGTGCTTTCATTGCTCCAGCAGCTGCAGGCTCTGGCATTCCAGAGGTAAAAGCATATCTCAATGGCGTGGATGCTCACTCTATATTGGCTCCTAGCACCCTTTTTGTAAAGATATTTGGTTCCATCCTTGGAGTTTCTGCTGGATTTGTGGTGGGAAAAGAAGGACCTATGGTACACACAGGTGCATGCATAGCTTCTTTATTAGGGCAGGGTGGATCTCGCAAGTATCACTTGACTTGCACATGGCTTAGATATTTCAAAAACGACCGAGACCGGCGAGACATGATTACTTGTGGTGCTGCTGCCGGTGTTGCTGCTGCCTTTCGTGCACCAGTAGGTGGTGTTCTCTTTGCCCTTGAAGAGGCAGCTTCATGGTGGAGGAGTGCTCTTCTTTGGAGGACATTTTTCACAACAGCAGTGGTTGCTATTGTTTTAAGAGTTGGAATTCAGTTTTGTGCCACAGGGAAATGTGGACTATTTGGGGAAGGAGGAGAGTACCAAAACTTCCAATGCCCACCAGGCTACTACAATGATCTTGCTTCACTCTTTCTAAACACCAACGACGATGCTATTCGCAATCTCTTCAGCCCCAAGATAATAAAAGAGTTTCACATTTCCAGCTTGTTCATCTACTTTACCACTATTTACTCTCTTGGGATAATCACTTATGGCATTGCCATTCCATCCGGGCTCTTCATTCCTGTGATACTTGCCGGTGGAGCCTATGGCCGTCTCATTAGCCACCTCTTTGATCCGATCACGAAGCTTGACAGAGGACTCTTTGCCCTACTTGGTGCTGCTTCCTTCCTTGGTGGCACCATGAGAATGACAGTTTCTATTTGTGTCATATTGCTTGAACTCACCAATGATCTCTTGTTACTTCCACTTGTGATGTTGGTCTTATTAGTCTCCAAAACTGTGGCTGATATCTTCAACAAGGGTGTCTATGACCAAATACTTAAGATCAAAGGACTTCCCTTTTTGGAGGCTCATGCAGAACCTTACATGAGGAGTTTAGCTACACGTGATGTGGTTTCTGGTCCATTAGTAACCTTTTCAGGCATTGAAAAGGTTGGGAACATACTCCATGCTGTGAGTGCTACAGCACATAATGGATTTCCTGTCATTGATGAACCACCTTTTGTGGATGCACCTGAGTTATGTGGCCTTGTACTGAGGTCTCATTTGCTAGTGTTACTGAAGGAGAAGGTTTTTTCAAGAGACAAGGATTTCATAGACCAAAGTGTTTTCAAAAGAGTTTCTACTTTGGATTTTGGAAAGGCAGGATCAGGAAAAGGGATCACACTAGAGGATCTTGATATTGAAGAGGAAGAGATGGATATGTATGTTGATCTCCATCCCATAACTAATGCATCCCCTTACACTGTGGTTGAGACAATGTCACTTGCCAAAGCTGCTATTCTTTTCCGCCAACATGGACTCAGGCATATGTGTAGACCACCAGTTGTTGGGATTCTAACACGCCATGATTTTATGCCAGAGCATGTTTTGGGACTTTACCCTGATATCAAGCTTCACAAGCGGCAATGA 1839 0.4372 MDKEEDVNHGDDYKHDIENEGLLYGNEEIGRYWSELSDRNMAYTEPLLVKRINTTSQIALVGANLCPIESLDYEYLEAFLAYAGLNICLAAAAAALCAFIAPAAAGSGIPEVKAYLNGVDAHSILAPSTLFVKIFGSILGVSAGFVVGKEGPMVHTGACIASLLGQGGSRKYHLTCTWLRYFKNDRDRRDMITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAIVLRVGIQFCATGKCGLFGEGGEYQNFQCPPGYYNDLASLFLNTNDDAIRNLFSPKIIKEFHISSLFIYFTTIYSLGIITYGIAIPSGLFIPVILAGGAYGRLISHLFDPITKLDRGLFALLGAASFLGGTMRMTVSICVILLELTNDLLLLPLVMLVLLVSKTVADIFNKGVYDQILKIKGLPFLEAHAEPYMRSLATRDVVSGPLVTFSGIEKVGNILHAVSATAHNGFPVIDEPPFVDAPELCGLVLRSHLLVLLKEKVFSRDKDFIDQSVFKRVSTLDFGKAGSGKGITLEDLDIEEEEMDMYVDLHPITNASPYTVVETMSLAKAAILFRQHGLRHMCRPPVVGILTRHDFMPEHVLGLYPDIKLHKRQ 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1666 612 Gene3D Clc chloride channel 274 425 - -
Aed3g1666 612 Gene3D Clc chloride channel 49 273 - -
Aed3g1666 612 SUPERFAMILY Clc chloride channel 77 427 IPR014743 -
Aed3g1666 612 CDD CBS_pair_voltage-gated_CLC_euk_bac 427 597 - -
Aed3g1666 612 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 259 610 - -
Aed3g1666 612 PRINTS Plant CLC chloride channel signature 218 226 IPR002251 GO:0005247|GO:0006821|GO:0016020
Aed3g1666 612 PRINTS Plant CLC chloride channel signature 232 242 IPR002251 GO:0005247|GO:0006821|GO:0016020
Aed3g1666 612 PRINTS Plant CLC chloride channel signature 250 257 IPR002251 GO:0005247|GO:0006821|GO:0016020
Aed3g1666 612 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 75 260 - -
Aed3g1666 612 PANTHER CHLORIDE CHANNEL PROTEIN CLC-C 75 260 - -
Aed3g1666 612 PANTHER CHLORIDE CHANNEL PROTEIN CLC-C 259 610 - -
Aed3g1666 612 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 34 77 - -
Aed3g1666 612 SUPERFAMILY CBS-domain pair 428 595 IPR046342 -
Aed3g1666 612 PRINTS Chloride channel signature 102 119 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Aed3g1666 612 PRINTS Chloride channel signature 133 152 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Aed3g1666 612 PRINTS Chloride channel signature 197 216 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Aed3g1666 612 Pfam Voltage gated chloride channel 90 246 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Aed3g1666 612 Pfam Voltage gated chloride channel 279 405 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Aed3g1666 612 PANTHER CHLORIDE CHANNEL PROTEIN CLC-C 34 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1666 Aed-Chr3 21310204 21318962 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1666 251 606 Ion Channels AT5G49890 69.146 6.51e-170 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1666 K05016 - gmx:100809070 573.548