Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1663 ATGGCTTACCCACATTACCGATCACAGTTCGGAGACACAACTTTCACTAAGGTCTTCGTTGGAGGCCTAGCTTGGGAGACTCCAACCGAGGAAATGCGCAAGTATTTCGATCAGTTTGGCGACATTCTTGAAGCTGTCATTATCACTGATAAGAACACTGCCAAATCTAAAGGCTACGGATTCGTAACGTTCCGTGATCCAGAATCAGCTAGAAGAGCATGTGCTGATCCAAACCCAGTTATAGATGGTAGAAGAGCAAATTGTAACATTGCTTCTCTGGGAAGACCTCGACCATCACCTCCTAGAGGAAGAGGTACATTCCAAGGAGGAGGAGGACCAGGGACGGCAGCAGCGTCGTACGGTGGAGTGCCGGCGGCAGGACCACCGGCACTCGCTCCGCCGCCGCCGCCGCTGGTGTACCCGCCATACGGCTACCCTACCTACACCCCTGATTATGGGTACCACCAAGCCACATTGTATAACCCACAAATGCAGCAACCACAGTACTACCAACAACTCTATGGACCATCATCTTCCACCATGGGTTCCCCTTATTACTATGGCTACTCAATGCAAGCAGCACCAAGGGGCACATTCTCTTCACCCCAACCACATCGCTTACCAGCTGGACCCTCCTATGTATACTACCCTACAACCATGGAAGGGTCCTTCTCTGCTTATCGTCCACCACCTCAATTGCAACAATTACCAATAAGGCATCCCCCTCCTTCTCCTAGTGATTCACAGACTCAGCAGCGTGCCTCATCCGAGACAGCAGGTGGAGTAGTTATAACTTCAGAAAGTTCAAATACTCAAGGAAGGAACTGA 828 0.506 MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRKYFDQFGDILEAVIITDKNTAKSKGYGFVTFRDPESARRACADPNPVIDGRRANCNIASLGRPRPSPPRGRGTFQGGGGPGTAAASYGGVPAAGPPALAPPPPPLVYPPYGYPTYTPDYGYHQATLYNPQMQQPQYYQQLYGPSSSTMGSPYYYGYSMQAAPRGTFSSPQPHRLPAGPSYVYYPTTMEGSFSAYRPPPQLQQLPIRHPPPSPSDSQTQQRASSETAGGVVITSESSNTQGRN 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1663 275 SUPERFAMILY RNA-binding domain, RBD 9 115 IPR035979 GO:0003676
Aed3g1663 275 PANTHER - 1 265 - -
Aed3g1663 275 PANTHER GEO13361P1-RELATED 1 265 - -
Aed3g1663 275 SMART rrm1_1 17 89 IPR000504 GO:0003723
Aed3g1663 275 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Aed3g1663 275 MobiDBLite consensus disorder prediction 225 275 - -
Aed3g1663 275 MobiDBLite consensus disorder prediction 92 121 - -
Aed3g1663 275 CDD RRM_RBM24_RBM38_like 16 91 - -
Aed3g1663 275 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
Aed3g1663 275 Gene3D - 3 113 IPR012677 -
Aed3g1663 275 MobiDBLite consensus disorder prediction 245 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1663 Aed-Chr3 21294738 21300317 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1663 12 92 C2H2 Transcription Factor Family AT2G19380 37.037 1.08e-13 68.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1663 3 21294738 21300317 Aed3g1663 3 21294738 21300317 ECH
Aed3g1663 3 21294738 21300317 Aed10g0194 10 1544291 1548343 PCT