Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1643 ATGACGAACCGTAATGTGAATAACACGCTTATGGAGTTGGCAATGTCGATTTCTAACTCAAGTGCTGCGGTGCCAGGAATAATGGCCTTGCTTGGTGGGTTTTTGGGCCAACCCCAGAAGAAGCTCTTAACCAAAACTTTGGAAGATGCAAGTGTTGTTAGAGTTAACAACAACAACAGCACATGGAATATTAGTATTGATTCAATGAGAGCCTCTTCTCCCACACGAGTCAAATCCACACAAAACAACAACAACAACAGCCAAAACCAAGACCCAACGAGCCCTTGGACTCTTTATCACCCTTCGGCACTGAGCATGTTTGATCAGATTATATGTGAGTCCAAAGGGAAGCAGATTGTCACTTTTCTTGACTATGATGGAACTCTCTCCCCAATTGTTGCAGATCCAGCTAAAGCATACATGAGTAAAAAGATGAGGGCCACGTTAAAGGACATAGCAAGTTATTTCCCCACCGCCATCGTGAGTGGAAGGTGCCTAGATAAGGTGTATGACTTTGTAAGATTGGCAGAGCTGTACTATGCTGGAAGCCATGGCATGGACATCAAGGGACCAACAAATAGGCGAAGTACTAAGAAAGGAAATAATAATGAACAAATGCTATACCAACCCGCTAGTGAATTCTTACCCACGATCAATGAGGTGTACAACATCTTGGTGGAAAAAACAAAATCTGTCCCGGGGGCTAAGGTAGAAAATAACAAGTTTTGCTTGTCCGTGCACTTTCGCTGTGTTGACGAAAAGAACTGGGTGTCATTGGCTGAACAAGTTAGCTTGGTGCTGAACGAGTACCCAAAACTCAAGCTAACTCAAGGGAGAAAAGTGCTTGAGATTCGACCAACCATAAAATGGGACAAGGGCAAGGCTCTTGAATTCTTGCTAGAGTCTCTAGGATATGCTAATTCTGATAATGTATTTCCAATCTATATTGGTGATGATCGGACTGACGAAGATGCTTTTAAGGTTTTACGAAGGAGGGGGCAAGGGATAGGGATTCTTGTTTCTAAAATTCCAAAGGAAACCGATGCTTCCTACACCTTGCAAGATCCAACAGAGGTTGGGCAGTTTTTGCGGCGTTTGGTGGAGTGGAAGAGAACAAGTTCCCAATACCACAAGTCGTTGTAG 1143 0.4357 MTNRNVNNTLMELAMSISNSSAAVPGIMALLGGFLGQPQKKLLTKTLEDASVVRVNNNNSTWNISIDSMRASSPTRVKSTQNNNNNSQNQDPTSPWTLYHPSALSMFDQIICESKGKQIVTFLDYDGTLSPIVADPAKAYMSKKMRATLKDIASYFPTAIVSGRCLDKVYDFVRLAELYYAGSHGMDIKGPTNRRSTKKGNNNEQMLYQPASEFLPTINEVYNILVEKTKSVPGAKVENNKFCLSVHFRCVDEKNWVSLAEQVSLVLNEYPKLKLTQGRKVLEIRPTIKWDKGKALEFLLESLGYANSDNVFPIYIGDDRTDEDAFKVLRRRGQGIGILVSKIPKETDASYTLQDPTEVGQFLRRLVEWKRTSSQYHKSL 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1643 380 CDD HAD_TPP 122 360 - -
Aed3g1643 380 Pfam Trehalose-phosphatase 122 356 IPR003337 GO:0003824|GO:0005992
Aed3g1643 380 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 378 IPR044651 GO:0004805|GO:0005992
Aed3g1643 380 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 378 - -
Aed3g1643 380 SUPERFAMILY HAD-like 122 370 IPR036412 -
Aed3g1643 380 MobiDBLite consensus disorder prediction 72 95 - -
Aed3g1643 380 TIGRFAM T6PP: trehalose-phosphatase 117 367 IPR003337 GO:0003824|GO:0005992
Aed3g1643 380 Gene3D - 119 226 IPR023214 -
Aed3g1643 380 Gene3D - 235 379 IPR023214 -
Aed3g1643 380 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 122 332 IPR006379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1643 Aed-Chr3 21032255 21035153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1643 115 368 Trehalose Biosynthesis Gene Families AT1G06410 24.907 5.61e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1643 K01087 - gmx:100792915 646.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1643 3 21032255 21035153 Aed3g1643 3 21032255 21035153 ECH
Aed3g1643 3 21032255 21035153 Aed10g0218 10 1754505 1757307 PCT