Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1612 ATGCCTCCGCCGCAGCCCCGCCGCGTCGACCCCAAAATCTGGCGGGCTTGCGCCGGCGCCGCCGTGCAAATCCCCAAGCTCCATTCTAGGGTTTACTACTTCCCCCAGGGCCACATGGAACACGCCTCCCCCTCGCATTACCCTCTCCTCCGCTCACTCCCCTTCGTCCCTTGCCACGTGTCCTCCCTCGATTTGCTCGCCGATCCCTTCTCCGACGAGGTCTTCTCCAAGTTCCTCCTTACTCCGATTTCGCAGCCTTTTCAAAACGACGGTGAGGGCGTTCGAAACGGCGTCGACGACGACGAGAAGGACCGCGAGAACGGCGGCGTCGTTTCGTTCTCGAAGATTCTCACTCCCTCCGACGCCAACAACGGCGGTGGATTCTCCGTTCCGCGTTTCTGCGCTGACTCCTGCTTCCCTCCGCTCGATTTCCGTGCCGATCCGCCGGTCCAGCTTCTATCCATCGCCGACATCCACGGCGTCGAGTGGCGCTTCCGCCACATCTACCGCGGCACGCCGCGCCGCCACCTCTTCACCACCGGCTGGAGCAAGTTCGTCAACCACAAGAAGCTCGTCGCCGGCGACACCGTCGTCTTCGTTAAGGACTCCGACGGTAACGTCTCCGTCGGGATCCGCCGCGCTGCTCGCTTCACCGCCACAGTCGAGACTCCGCCGCCTCCGGAAGGGGAGGGGTTTTCGCGGTCCGCGACGGGGAGAGTGTCCGCGGAGGCGGTGGCTGCCGCCGCGGAATCCGCGGTGCGAAACGCACCATTTGAGGTGGTGTATTATCCGAGGACCAGTTTTGCGGATTTTGTAGTGAGTGCTGAGGCTGTGGAGGAATCGATGAAAATTGCGTGGGTTGGTGGAATGAGAGTGAAGATAGCAATGGAGACTGAGGATTCTTCTAGAATGACGTGGTTTCAAGGGACGGTGTCTTCTGCATGTGCCTCTGATAATGGACCTTGGCGCATGCTTCAGGTTAACTGGGATGAACCTGAAGTCTTGCAGAATGCAAAGCGAGTCAGTCCTTGGCAGGTTGAACTAGTTTCCCCCCCATTTGCACTTCATACAGTGTTTTCCCCTTCAAAAAGGCTTAGAGCTGACCAGGGTTCTGGGCTAAGTGATAGGAAGGGAGAGCCCTTCTTTCCTATGACAGGGTTCCCTAACTCAACAATGGGACACATGACAGGGTTCCCTAATTCAACAATGGGACACTTGGATAAATCATTGTTGAGTTATGATACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTATTTTCTGCATTGAGTTTTTCCAACTTTTTAAATGATAATTCTTATCTGTATACGGGTAGTGGTTCCTTTGGGAACAATCCAGGGCAAAGTTTGGGAACTGTGACAACAGAGCTAAACATTAGCAGTTCGCAATCAGATGACTTGTCACCACATAGCCAGAGTAGTTTTCATTCCTTTGGCACAGAGTTTACTGGGACCCGGAACTGTGACACCAAAGTTGGTTCTGGTTCATTTCTGCTGTTTGGTAAGATCATACAGCCCGCTGAAAGTGATTTGCATGATGCTGATTGCATGGAACGCAATGGCAGTAGGGGCAGCAATAAACTGAAGTCAGTTGAGGCATGCTATTTTTCAAAGTAG 1641 0.5436 MPPPQPRRVDPKIWRACAGAAVQIPKLHSRVYYFPQGHMEHASPSHYPLLRSLPFVPCHVSSLDLLADPFSDEVFSKFLLTPISQPFQNDGEGVRNGVDDDEKDRENGGVVSFSKILTPSDANNGGGFSVPRFCADSCFPPLDFRADPPVQLLSIADIHGVEWRFRHIYRGTPRRHLFTTGWSKFVNHKKLVAGDTVVFVKDSDGNVSVGIRRAARFTATVETPPPPEGEGFSRSATGRVSAEAVAAAAESAVRNAPFEVVYYPRTSFADFVVSAEAVEESMKIAWVGGMRVKIAMETEDSSRMTWFQGTVSSACASDNGPWRMLQVNWDEPEVLQNAKRVSPWQVELVSPPFALHTVFSPSKRLRADQGSGLSDRKGEPFFPMTGFPNSTMGHMTGFPNSTMGHLDKSLLSYDTFPAGMQGARHDLFSALSFSNFLNDNSYLYTGSGSFGNNPGQSLGTVTTELNISSSQSDDLSPHSQSSFHSFGTEFTGTRNCDTKVGSGSFLLFGKIIQPAESDLHDADCMERNGSRGSNKLKSVEACYFSK 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1612 546 Gene3D - 110 215 IPR015300 -
Aed3g1612 546 PANTHER AUXIN RESPONSE FACTOR 5 536 - -
Aed3g1612 546 ProSiteProfiles B3 DNA-binding domain profile. 113 215 IPR003340 GO:0003677
Aed3g1612 546 Pfam B3 DNA binding domain 113 214 IPR003340 GO:0003677
Aed3g1612 546 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 5 536 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aed3g1612 546 CDD B3_DNA 112 213 IPR003340 GO:0003677
Aed3g1612 546 Pfam Auxin response factor 248 323 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Aed3g1612 546 Gene3D - 287 351 - -
Aed3g1612 546 SUPERFAMILY DNA-binding pseudobarrel domain 105 221 IPR015300 -
Aed3g1612 546 SMART B3_2 113 215 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1612 Aed-Chr3 20681258 20685285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1612 7 534 B3 DNA Binding Superfamily AT1G77850 47.780 2.29e-158 463
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Aed3g1612 B3 7.9e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1612 - - gmx:100805638 973.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1612 3 20681258 20685285 Aed3g1612 3 20681258 20685285 ECH
Aed3g1612 3 20681258 20685285 Aed10g0250 10 2014588 2018788 PCT