Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1607 ATGAACCACCTACCTCGAATATTATTCGGGCATAGAAAGAAACAAGCCTCCAGTATGGACCCGAAGAGGAGGAGTAAGAAGCAGCAGCAGCCGAAGCTCGAGCGGCGTAACGCCGCGAAGCACTTCGAATACGACGCCGGATCGTCCCCCTCGTCGCGCGACTCCGCTGCTGCATCGACCTCGTCGTCGTCTTCGTCGTCGTTGCACTACACGCGCTCGATGGAGATGTATGACCGGAAGAGCTTCCGAATCGAGGGCGTTGAGGGCGAGCTGGACCGGATTTGCCTCAGCCTCGGCCTCTCCGGCCCGGATGACTTCTCCATTCCGCCGGCGGCCTGGGAGGCCATGAAGCTCCGGTCATCGTCCGACCTCCTGCCGCGGTGGCCGAAGCACGGCGGAGTGGAGTTCGACGAAGATGCGAAGGAGAAAGAGGAGGAGGAAATTGGAGTATTGGAAATTGAGGATCGAGCTAGGGTTTTGGATGAGTGTGTTGTTCCTGCTGAGAGCAGTGGTTGCTGCGGCGGCGGCGGCGGTGGTGGAATTAAGGGTTTTCGGCCTCCGATGCTGCTGAAGCCGCCGCCGGGGGTTAGGGTTTCGGTGGTGGACGACGCCACGTGTTCCACGTGGGATTTGATGCGGGATTTTGCGCCGAAAGCGGAAGGAGGAGGAGGGAAGGAGAGTTACGCGGAGTTAAATTCTTCTGATGATGATGAGCGAGAAGAGAAGGGAGAAGAGGAAGATGAAGTTGGTGGAGTGACAGTGGAGAGTGTAGAAGAGGAAAATGCGGCGAGGATTGCGGAGATTGATGATTTTTCGGGGTTTTCTACTTCGAATGAAGATGATTCTTCCAGCACTACCACGGGTTCTAATAATATATCTCCCAATGGGAGAATCAAGCGTGTTATTACTGCGGGTAATTGGCAGAAGGGTGAGCTTTTGGGGCGTGGCTCGTTTGGTTCTGTGTATGAAGGGATTTCTGAAGATGGATTCTTTTTTGCTGTAAAAGAAGTTTCACTACTTGATCAAGGGAGTCATCAGGGAAGGCAAAGTGAAATTGTACTTTTGAGTCAATTTGAACATGAGAATATAGTTCAATACATTGGCACTGAAATGGATGCATCAAATCTGTATATCTTTATTGAGTTTGTAACGAAAGGTTCCCTTCGAAGCCTCTACCAGAGATTTACTCTTCGAGATTCTCAAGTATCTGCCTATACAAGACAGATTTTGCATGGTTTAAAGTATCTTCATGATCGAAATATTGTTCACAGGGATATTAAATGTGCAAATATATTGGTGGATGCAAATGGATCTGTTAAGCTTGCTGATTTTGGAGTGGCAAAGGCAATCAAATTTAATGATGTTAAATCATGCAAGGGAACACCTTTTTGGATGGCCCCAGAGGTTGTAAAAGGGAAAAATACAGGTTATGGGCTTTCAGCTGATATATGGAGTCTGGGATGTACTGTGTTGGAGATGTTAACGGGCCAAATTCCATACTGTCACTTAGAATGTATGCAGGCATTGTTTAGAATTGGAAAAGGTGAGCTACCTCTTGTGCCCGATTCTCTTTCAACAGATGCACGAGATTTTATCCTGCAATGTCTCAAAGTTAATCCAGATGAACGTCCTAGTGCTGCTCAACTCTTAAACCATACCTTTGTCCAAAGGCCACTACTTTCCCAGTCCTCTGGTTCGGCATCTCCTTATATTCGAAGGGGTTAA 1725 0.4846 MNHLPRILFGHRKKQASSMDPKRRSKKQQQPKLERRNAAKHFEYDAGSSPSSRDSAAASTSSSSSSSLHYTRSMEMYDRKSFRIEGVEGELDRICLSLGLSGPDDFSIPPAAWEAMKLRSSSDLLPRWPKHGGVEFDEDAKEKEEEEIGVLEIEDRARVLDECVVPAESSGCCGGGGGGGIKGFRPPMLLKPPPGVRVSVVDDATCSTWDLMRDFAPKAEGGGGKESYAELNSSDDDEREEKGEEEDEVGGVTVESVEEENAARIAEIDDFSGFSTSNEDDSSSTTTGSNNISPNGRIKRVITAGNWQKGELLGRGSFGSVYEGISEDGFFFAVKEVSLLDQGSHQGRQSEIVLLSQFEHENIVQYIGTEMDASNLYIFIEFVTKGSLRSLYQRFTLRDSQVSAYTRQILHGLKYLHDRNIVHRDIKCANILVDANGSVKLADFGVAKAIKFNDVKSCKGTPFWMAPEVVKGKNTGYGLSADIWSLGCTVLEMLTGQIPYCHLECMQALFRIGKGELPLVPDSLSTDARDFILQCLKVNPDERPSAAQLLNHTFVQRPLLSQSSGSASPYIRRG 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1607 574 MobiDBLite consensus disorder prediction 13 42 - -
Aed3g1607 574 Gene3D Transferase(Phosphotransferase) domain 1 304 569 - -
Aed3g1607 574 SMART serkin_6 307 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g1607 574 MobiDBLite consensus disorder prediction 48 70 - -
Aed3g1607 574 ProSiteProfiles Protein kinase domain profile. 307 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g1607 574 MobiDBLite consensus disorder prediction 271 296 - -
Aed3g1607 574 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 76 568 - -
Aed3g1607 574 Coils Coil 134 154 - -
Aed3g1607 574 MobiDBLite consensus disorder prediction 1 70 - -
Aed3g1607 574 MobiDBLite consensus disorder prediction 237 254 - -
Aed3g1607 574 ProSitePatterns Serine/Threonine protein kinases active-site signature. 421 433 IPR008271 GO:0004672|GO:0006468
Aed3g1607 574 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 76 568 - -
Aed3g1607 574 ProSitePatterns Protein kinases ATP-binding region signature. 313 335 IPR017441 GO:0005524
Aed3g1607 574 Pfam Protein kinase domain 308 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g1607 574 SUPERFAMILY Protein kinase-like (PK-like) 288 561 IPR011009 -
Aed3g1607 574 MobiDBLite consensus disorder prediction 216 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1607 Aed-Chr3 20619351 20627300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1607 181 559 MAP Kinase Kinase Kinase AT4G08500 60.309 4.51e-144 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Aed3g1607 Pkinase 1.3e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1607 K13414 - gmx:100819177 830.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1607 3 20619351 20627300 Aed3g1607 3 20619351 20627300 ECH
Aed3g1607 3 20619351 20627300 Aed10g0257 10 2074164 2080682 PCT