Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1570 ATGAAGGGTTCTTGCGATGTTGCCACACCAAAGAAGCGAAAATCAGAGTCAAATGAGCAATGTTCCCCTCCGGCCGAGAAAAAGAGGAGGTCCACCCGAAAACTCACTCCAACAAAAGGAGCTTCCAAGAATAGCACGCCGAAGAAGAATGCCACACCGAAAAGTGGATCCGTCCGATCGCCTGATGCATCGCCTTGGAAGATCGATCTGCGGATGGAGGCTAAATTGTCAGCAGAGGAAGATTCGAGGGTGTATGCAGGACGGAGAATACATCCGTTTTTCTCGTTGTGGAAGGAGGAGAGGAAAATTGAGGAGCAGGAACGTAGTTTATTAGCAGCCAAGAGGAAAGAGGGAGGATATATAAGTGGTCCCATTCATGTCTTTGAAAATGTTCAGGAAGATGCTTCACCCCTTGATTGGAGTGGCTGGAGATTTTTGGATAAGACCACCACTGCAGATTTTGATCCAGAAAGTTCAAATTTATCCGTTATGGATGGTTCTGTTGGATCCTTAAATTTAGATATCTTACCTAGTGCTTTAAGATCCTCAAGTACTTCAATTTCTCAGAATGTCATGTGCTGCCCAAGTCAACCTTCTATACATCCAGACAGTATGCTGGAAATATCACCACCAAACTTAGATGTGCTAGCTAATGAGCAAGCAATATGTCCTTCGAAGTCAGGAGATGCCAAATTGGACCTGGACTTGGTGGTGAATGAAAATACTTTTTCAGGGCAAAAAGGAGTCTTCAGAAAGTCAGATACTGAGCCACTGAGTAAATTTCTTCAAGAAAGTATGAGGCCTTACTACCATAGTTGTAAAGATAAGATTGAGGGCAGCTTATGGATTCATAAGTACAAGCCAACAAAGCCCTTTGAGGTGTGTGGTAATGAAAAGACTATAAATTTCTTGTGTGACTGGTTACATCTTTGGCATGAAAGACGTTCTCAACGCAGAAAGGGTTCCTCTAACAGGGATCGAAGTAACAGGCAAGGTGATGACGATGATAACTATATCTGTTCTGATAATGATTATGATTCAGAACATATTAATGAGAAGGATTCCCTACAGAATGTTCTTTTGCTTACCGGACCAAATGGGAGTGGAAAATCCGCAGCTGTCTATGCTTGTGCCCAAGAACAAGGTTTTAAGGTTTTAGAGGTCAATCCATCAGATTGTCAAAAGGGGACTCCTGTCAAGCAGCAAAATTTTGGATTGACTGTTGAATCACATTGTCACAGAAAGTTCAAAAGGTCATTGGATTTCACTGAGAGTTCACCTAAGAAAACTGAGAAGTTGCTTCCAGGTCCAGCTTTGCCTAATGGTATAGCAGCTGAGGAGATGGATGATGGGGCTATTGAACTGATAACCATTTCTGATGATGAGGATGTGGATGTGAAACATGGAAAAAGTAATGTATTTGCATGTGGTAGTGTCCAAACCTTAATTCTAGTTAAGGATGTGGACAGCCTTTTTCCTGAAGATCGCAGACGTAATGCTGCCATGCAACACATTTCTAGGACAGCAAAAGGGCCAATTATATTGACCAGCAATAGTAATAATGGTGGCCTACCAAATAGTTTTGCCAGACTACATGTTTCTTTGTCATCACCATTGCCAGATGAGCTACTTTGCCATATGTACATGGTATGCGTCACAGAAGAAGTCAACATCAATCCTCTTTTACTGAAAAAATTCATCCAGTCTTCTGATGAAGATATTCGAAAAACCATTATGCAACTTCAGTTCTGGTTCCAGAGTGAAAAATATAGAAAAGACAGGAAAGTGCAGAAGGTGTATGGCTTACTTCCTTTTGATCTTGAGGCTTGTCATCATATAATACCAAAGATACTACCCTGGAGTTATCCCTCAGAGTTATCCAAACTAATTGAGAAGGAAGTTGCCAAGTCAATAACCATAATGGAGGAAAACTCAAGCTTGCTGGGTTTAGACATAAATGAAAGGAAAAATGATTTAGATGTGCAGTGTATGAAGACTGATTGTTTAGATGCCGAGGTAGAGAGGATCAAGAGATCTCTTACAGACAGCAGTAGGTTTGAAAGTCAACATAGTGCTATTTCTGAACTTTCAAATTGCTCTGGATCACTGGTAACATCCCCTTGGCAAAAGGGTCAAAGTAAACTTATAGTGATGTCCTCTGATTCTGAAAAGATGGATCCAAATAATGGACATTCTCTAGACATTCATAAGGAAATTTACAAGAGGCATTCCCCTGAAAGCAACAGTACATCCTTTTGCAAACTGGTTTTTTCTGGTTTGAAAGATTCAGAGGAGGAACAGTGTAAACATTTAGAAACTGCTTATGATGCATGCTTAAATGAAACAAGTAAATCATTTGATATATCCTGTTTTCCAGGATCAATATCCATTCCTGAGACAGAAATTCCAAATGGAATAAATCCAATGTCTGGACCAGTGTCTTCTGGCTGCCAGGCTGGTCCGGTAGATGTTTCTCTGAATAATGAGCTAACACAGTTCACTTTGAGTATTTATCAGTCCTTAGACAAATTGCCACAAAACTCTGATTCATTGGCAAATACTGAAATTCCAGAATCTTCTTCAAAAGAACCTGTGCAAATTTTCAGAGATGGTACAGAAACCACAAAACTTGTTGAGTCCAGTCCATCTACGGCAATGGATATGGTACAAAATTTGTGGAGGAATCTTTGTATTGGTCGAAAGAATTTAGGACAGCATGCCAACCCAGAACAGCTGGGTGCTGCTATTCAAGTTGCTAAACTTACTAGTGGACTGACCAATCTAATTTCTGAAGCTGACTTACTGTTTCTTAATCACCAACTAAACAAATTTGGCATTATGGAGCCTCCAATGTCCCTTTCTGATGAAGCCACATACCATTGGTACGATGAGCAAATGATGATGTCTACTGTTGCTCTACATGGTTTTGGTTTTTATGCCAAACGTATATCAGAAGTAGGATCTAAGTTTGGTTGTAAGAACGATGTAGATCTAACTTCAGAGATGTTGGCTTGCACTACTAATGCTATGGCATTGGGAAAATTAACATCTTTGTCCAACATGATCCGGTCTATTATTCCTGCAAGATCATCATTGGCAATGAAAGGCCTTGCATTCAACGAATATATATCCTCACTGCGCCAGATTTCGATTTCGGAAGCTTACCGCATTTCACATGGTTGTGGAAAGATGAGTAAACGAAGGAGGGTTGCTCCACATTATTTGAGTAAAGGTAAAAAAAACTCGTTGTCTCCTGAAGATATATCATTGGTGTGTGAAGGTGATTTGTTTAGAACCATTTCTTCACAATACACTGCTAACATGGAAAGCAACTGTTCATGA 3342 0.4025 MKGSCDVATPKKRKSESNEQCSPPAEKKRRSTRKLTPTKGASKNSTPKKNATPKSGSVRSPDASPWKIDLRMEAKLSAEEDSRVYAGRRIHPFFSLWKEERKIEEQERSLLAAKRKEGGYISGPIHVFENVQEDASPLDWSGWRFLDKTTTADFDPESSNLSVMDGSVGSLNLDILPSALRSSSTSISQNVMCCPSQPSIHPDSMLEISPPNLDVLANEQAICPSKSGDAKLDLDLVVNENTFSGQKGVFRKSDTEPLSKFLQESMRPYYHSCKDKIEGSLWIHKYKPTKPFEVCGNEKTINFLCDWLHLWHERRSQRRKGSSNRDRSNRQGDDDDNYICSDNDYDSEHINEKDSLQNVLLLTGPNGSGKSAAVYACAQEQGFKVLEVNPSDCQKGTPVKQQNFGLTVESHCHRKFKRSLDFTESSPKKTEKLLPGPALPNGIAAEEMDDGAIELITISDDEDVDVKHGKSNVFACGSVQTLILVKDVDSLFPEDRRRNAAMQHISRTAKGPIILTSNSNNGGLPNSFARLHVSLSSPLPDELLCHMYMVCVTEEVNINPLLLKKFIQSSDEDIRKTIMQLQFWFQSEKYRKDRKVQKVYGLLPFDLEACHHIIPKILPWSYPSELSKLIEKEVAKSITIMEENSSLLGLDINERKNDLDVQCMKTDCLDAEVERIKRSLTDSSRFESQHSAISELSNCSGSLVTSPWQKGQSKLIVMSSDSEKMDPNNGHSLDIHKEIYKRHSPESNSTSFCKLVFSGLKDSEEEQCKHLETAYDACLNETSKSFDISCFPGSISIPETEIPNGINPMSGPVSSGCQAGPVDVSLNNELTQFTLSIYQSLDKLPQNSDSLANTEIPESSSKEPVQIFRDGTETTKLVESSPSTAMDMVQNLWRNLCIGRKNLGQHANPEQLGAAIQVAKLTSGLTNLISEADLLFLNHQLNKFGIMEPPMSLSDEATYHWYDEQMMMSTVALHGFGFYAKRISEVGSKFGCKNDVDLTSEMLACTTNAMALGKLTSLSNMIRSIIPARSSLAMKGLAFNEYISSLRQISISEAYRISHGCGKMSKRRRVAPHYLSKGKKNSLSPEDISLVCEGDLFRTISSQYTANMESNCS 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1570 1113 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 281 595 IPR027417 -
Aed3g1570 1113 Coils Coil 761 781 - -
Aed3g1570 1113 MobiDBLite consensus disorder prediction 316 341 - -
Aed3g1570 1113 Coils Coil 96 116 - -
Aed3g1570 1113 Gene3D - 538 600 - -
Aed3g1570 1113 MobiDBLite consensus disorder prediction 37 59 - -
Aed3g1570 1113 PANTHER CHECKPOINT PROTEIN RAD17/RAD24-RELATED 1015 1109 - -
Aed3g1570 1113 PANTHER CHECKPOINT PROTEIN RAD17/RAD24-RELATED 1 1016 - -
Aed3g1570 1113 CDD AAA 360 392 - -
Aed3g1570 1113 MobiDBLite consensus disorder prediction 1 31 - -
Aed3g1570 1113 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 1015 1109 IPR004582 GO:0006281
Aed3g1570 1113 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 1 1016 IPR004582 GO:0006281
Aed3g1570 1113 SMART AAA_5 356 539 IPR003593 -
Aed3g1570 1113 MobiDBLite consensus disorder prediction 1 64 - -
Aed3g1570 1113 Gene3D - 279 531 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1570 Aed-Chr3 20144643 20153819 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1570 277 394 Core DNA Replication Machinery Family AT5G22010 28.571 9.72e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1570 - - gmx:100815984 1556.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1570 3 20144643 20153819 Aed3g1570 3 20144643 20153819 ECH