Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1546 ATGGCAGGCTTCAGTGGCGACGAAACTGCTCCTTTCTTCGGCTTCCTCGGTATGGGAGCGGCGTACGGAACGGCGAAGAGTGGGGTGGGGGTGGCGTCGATGGGCGTGATGCGGCCGGAGCTCGTGATGAAGTCGATCGTGCCAGTGGTTATGGCGGGAGTGTTGGGAATCTACGGATTGATCATTGCGGTTATTATCAGCACTGGGATAAACCCAAAGGCCAAGTCTTACTATCTCTTTGATGGCTATGCCCACTTGTCCTCTGGCCTTGCCTGTGGCCTTGCCGGCCTCTCCGCTGGCATGGCCATTGGGATTGTTGGTGATGCCGGTGTCAGGGCTAATGCGCAGCAACCGAAGCTGTTTGTTGGCATGATTCTTATCTTGATTTTCGCAGAAGCTCTTGCTCTGTATGGCCTCATTGTGGGTATCATCCTCTCATCTCGAGCAGGTCAATCTCGTGCTGAATAG 468 0.547 MAGFSGDETAPFFGFLGMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1546 155 SUPERFAMILY F1F0 ATP synthase subunit C 77 146 IPR035921 -
Aed3g1546 155 CDD ATP-synt_Vo_c_ATP6C_rpt1 12 70 - -
Aed3g1546 155 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 155 - -
Aed3g1546 155 CDD ATP-synt_Vo_c_ATP6C_rpt2 79 146 - -
Aed3g1546 155 Gene3D - 4 152 IPR035921 -
Aed3g1546 155 PRINTS Vacuolar ATP synthase 16kDa subunit signature 20 44 IPR000245 GO:0033179|GO:0046961|GO:1902600
Aed3g1546 155 PRINTS Vacuolar ATP synthase 16kDa subunit signature 46 70 IPR000245 GO:0033179|GO:0046961|GO:1902600
Aed3g1546 155 PRINTS Vacuolar ATP synthase 16kDa subunit signature 124 147 IPR000245 GO:0033179|GO:0046961|GO:1902600
Aed3g1546 155 PRINTS Vacuolar ATP synthase 16kDa subunit signature 97 123 IPR000245 GO:0033179|GO:0046961|GO:1902600
Aed3g1546 155 Pfam ATP synthase subunit C 87 145 IPR002379 GO:0015078|GO:0033177|GO:1902600
Aed3g1546 155 Pfam ATP synthase subunit C 14 66 IPR002379 GO:0015078|GO:0033177|GO:1902600
Aed3g1546 155 PANTHER V-TYPE PROTON ATPASE SUBUNIT C2 3 155 - -
Aed3g1546 155 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 15 111 IPR011555 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1546 Aed-Chr3 19911226 19913868 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1546 1 155 Primary Pumps ATPases(2) AT2G16510 93.293 8.19e-102 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1546 K02155 - gmx:100776231 267.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1546 3 19911226 19913868 Aed3g1546 3 19911226 19913868 ECH