Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1526 ATGGATCAGATACTACTTTTTCTCGTGTCCCTCTTCACCATTTTCATCCCCACTGGTTCTTCTTCTTCTTCTTCTTCTTCTTCATCATCTTCCACATCATGCCCCATAGATCTCAGCTACGTTCAAACCATTCCATGGAACAAATCACCATGCAAAGAAAACTCACTTGACAACAACAAAGAACCCTGCTGCAACACACTCCTAGGTGTCTTCGCCATTGGCCTCGCGGAACACCTCAGCCAAACTTCAACTTTCTACCTCCCCAATGAAAACACTTCCTCCACATGCTTACTCGACTTCAACCACATGCTTCAAAAACTCTTAATTCCCCCAAAGATAGTACCTTTATGCTTCCCCAACCCAACACGGTTTGTGTTCAACGCTTCAGCTTGTGCAGGCATTAGAAACACGCAAGATTGGAGGCAAAGGGTTGGCACGGTTAGTCCAGTTGACACGTGTTGCAATGGAGACCTCAGAGACAAGACTCGCTGCAAAATTTGCTCCGATGCTGCAGAACAAGTCAAATCTCAGCTCACAACTATTGACCCAAATGCTAATGCCACAAAGTGTTTTTACTACATCGTTTTGTATGCTGCTGCTGTTATTAACAAGTTTGGTACAACCGATGTAAGCACCACGGGTTGCATACTAGGCCTGGATCAACCCTCTAGTGGGGTAGTAACAGAACAAGGGTTAAATAATACTAATAGAGAAAAAGTGTTGAAGTTGGGTTTTACTTTGTTGGGTGCTGTGATTGGTGTTGTGCTTGCTTTAGTGATGATTGTTGTGTACAAAAAGTGGGATAAGAGAAGGAAGGAGCATGTTGTTTATCACAGGGAGACTGAGAACAAGGTGAGGGCAAGTGTTTTGCCTAATGCTGGTGCTAAATGGTTTCATGTGTCGGAGCTTAAGCGTGCCACTGATAAGTTTTCGCAGAGGAATGTTGTTGGTCAAGGTGGTGATGGAGTTGTGTACAAAGGGACTCTTTCAAATGGTGCTGTGGTTGCTGTGAAGGAGATTCTTGATTTGGAAATGGAAACCAACGGGGATGAAGATTTCTACTATGAGGTGGAGATCATAAGCAAGATCAAGCACAGGAACCTTCTTGCTCTTCGGGGATGTTGTGTTACAAGCGATAAGTTGAAAGGTAAGAGGAGGTTTCTGGTTTATGATTTCATGCCTAATGGGCCAGTAAAAGTTATGGAAAGGTTTGTTCATGTTGGAATGCTGTGTGCTCATGTGGTGGCGGCTTTAAGGCCTACTATTGTTGAGGCCCTTAAGATGTTAGAGGGTGATGTGGAAATTCCTGAGTTACCTGAGAGGCCTGTGCCACTTGGTCATGTGTACTTTCAATCTTCTTTGTTTCAGGGTTTGCAGAGAAGTGGTTGA 1389 0.4406 MDQILLFLVSLFTIFIPTGSSSSSSSSSSSSTSCPIDLSYVQTIPWNKSPCKENSLDNNKEPCCNTLLGVFAIGLAEHLSQTSTFYLPNENTSSTCLLDFNHMLQKLLIPPKIVPLCFPNPTRFVFNASACAGIRNTQDWRQRVGTVSPVDTCCNGDLRDKTRCKICSDAAEQVKSQLTTIDPNANATKCFYYIVLYAAAVINKFGTTDVSTTGCILGLDQPSSGVVTEQGLNNTNREKVLKLGFTLLGAVIGVVLALVMIVVYKKWDKRRKEHVVYHRETENKVRASVLPNAGAKWFHVSELKRATDKFSQRNVVGQGGDGVVYKGTLSNGAVVAVKEILDLEMETNGDEDFYYEVEIISKIKHRNLLALRGCCVTSDKLKGKRRFLVYDFMPNGPVKVMERFVHVGMLCAHVVAALRPTIVEALKMLEGDVEIPELPERPVPLGHVYFQSSLFQGLQRSG 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1526 462 Pfam Protein kinase domain 311 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g1526 462 PANTHER OS01G0253100 PROTEIN 25 398 IPR045271 GO:0004714|GO:0006468
Aed3g1526 462 Pfam SPARK 29 191 IPR043891 -
Aed3g1526 462 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 397 454 - -
Aed3g1526 462 Gene3D Phosphorylase Kinase; domain 1 270 392 - -
Aed3g1526 462 SUPERFAMILY Protein kinase-like (PK-like) 290 430 IPR011009 -
Aed3g1526 462 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 25 398 - -
Aed3g1526 462 ProSiteProfiles Protein kinase domain profile. 310 462 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g1526 462 PANTHER OS01G0253100 PROTEIN 397 454 IPR045271 GO:0004714|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1526 Aed-Chr3 19559491 19561353 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1526 397 451 Receptor kinase-like Gene Family AT1G11050 63.636 1.03e-18 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Aed3g1526 SPARK 1.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1526 - - gmx:100800481 569.311