Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1520 ATGAGAAACCCATCACCAACCAAGAACAAGAGGAACTGTAGCAACAACGGTATTAATAACAGCAACAACAACAACATTGGTGGTAGCAGCAGTAACAACAACAATAGTACCAACACGCCATGCTGCACCAAGGTTGGGTTGAAGAGAGGGCCATGGACGCCGGAGGAAGACGAGGTGTTGGCGAATTACATCAAGAAAGAAGGAGAAGGGCGCTGGAGAACGCTCCCGAAGCGCGCCGGCCTCCTCCGCTGTGGCAAGAGCTGCCGCCTCCGCTGGATGAACTACCTCCGCCCCTCCGTCAAGCGCGGCCAGATCGCCCCCGACGAGGAGGATCTCATCCTCCGCCTCCACCGCCTCCTCGGCAACCGGTGGTCTTTGATAGCTGGGAGGATTCCTGGAAGAACAGACAATGAAATAAAGAACTATTGGAACACCCATCTAAGTAAGAAGCTTATAAGCCAAGGGATTGATCCAAGAACCCACAAGCCTCTCAATCCACCAATTTCCAACACTACCACTACTTCCACTCTTGCTCCTCCAATGATCATCACCAATAACCATATTAATCATCACGATCTCACCAGCAACATTGTTAACCAAGGTGTTCATCTTCATCATGTTCATCATCTGGGTCAACACCATCATCATCATCATCACCAACCTCCAGTTTCTAATTATCCCTATGATGACAATATTTCAATACCTGCTCCCACCGATGATGTTTCTGCAATGGGGTTCATGGACAACGAGGACTGCAACAACGATGATGTCAGCAACATCAATTATTACTCCGACGATGTTTTCTCTTCCTTCCTCAACTCCTTGATCAACGATGATGCTTTCGCGGCACAGCAGCACCACCACGTGCAAACAGAGATTAATCCCAGTGAGCTTAGCACTATTAATATTAATCCACTTCCATGTGATGATCATCATCCTCTGGGTTCAATCAGCACTGCTTCTGCTGCACCGCAAGGTTATGATGATGAACTCGGGGCTCTGTGGGAATCGCCACTCGTGCATGCTACTTTCAGCCAACAACACGATCACATCATCACAGAGAGGGTTGTTCATGATCACCACAATCAATAG 1092 0.4844 MRNPSPTKNKRNCSNNGINNSNNNNIGGSSSNNNNSTNTPCCTKVGLKRGPWTPEEDEVLANYIKKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGQIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNPPISNTTTTSTLAPPMIITNNHINHHDLTSNIVNQGVHLHHVHHLGQHHHHHHHQPPVSNYPYDDNISIPAPTDDVSAMGFMDNEDCNNDDVSNINYYSDDVFSSFLNSLINDDAFAAQQHHHVQTEINPSELSTININPLPCDDHHPLGSISTASAAPQGYDDELGALWESPLVHATFSQQHDHIITERVVHDHHNQ 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1520 363 PANTHER TRANSCRIPTION REPRESSOR MYB5-LIKE 31 295 - -
Aed3g1520 363 Gene3D - 46 102 - -
Aed3g1520 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 97 151 IPR017930 -
Aed3g1520 363 SMART sant 48 98 IPR001005 -
Aed3g1520 363 SMART sant 101 149 IPR001005 -
Aed3g1520 363 CDD SANT 107 147 IPR001005 -
Aed3g1520 363 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 31 295 - -
Aed3g1520 363 CDD SANT 51 96 IPR001005 -
Aed3g1520 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 44 96 IPR017930 -
Aed3g1520 363 ProSiteProfiles Myb-like domain profile. 44 96 IPR001005 -
Aed3g1520 363 ProSiteProfiles Myb-like domain profile. 97 147 IPR001005 -
Aed3g1520 363 SUPERFAMILY Homeodomain-like 46 143 IPR009057 -
Aed3g1520 363 Gene3D - 106 166 - -
Aed3g1520 363 MobiDBLite consensus disorder prediction 156 176 - -
Aed3g1520 363 Pfam Myb-like DNA-binding domain 49 96 IPR001005 -
Aed3g1520 363 Pfam Myb-like DNA-binding domain 106 147 IPR001005 -
Aed3g1520 363 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1520 Aed-Chr3 19519422 19520912 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1520 39 278 MYB Transcription Factor Family AT3G13540 56.250 8.51e-84 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed3g1520 Myb_DNA-binding 2.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1520 K09422 - gmx:100797847 466.463