Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1519 ATGTCGAGGATATGCGTGAAGAGTCTCCCGAAAGACGTCGCCGAGGACGAACTACGCGAATTCTTCTCCCGGAAGGGAGGATTAGTCACCGACGCCAAGCTTATGCGTACAAAAGATGGTAAGAGTCGCCAATTTGCGTTTATCGGATATCGAACTGAAGATGAAGCTCGGGAAGCCATTCGATATTTCAACAATAATTTCCTTCGCACATCTAAGATTGTTTGTGAGGTGGCTAGAAAACATGGGGATGAAAATCTTCCTCGTCCGTGGAGTCGACATTCGAAGAAGAAAAATGATGATAAAGTGACTGCCCTGGCTGTGGAGAAACGTGCTAGAGCTAAGGGACAAGGAGAGAATTCGAAGGGGGGTGTTGGTGTTGATGTTGATGACCCGCAGCTTCAGGATTTTCTTCAGGTCATGCAGCCTCGGGTTAAGTCTAAAATGTGGGCAAATGATACGATTGCGACCAACAAACAAGCAGTGCCAAACGATGATGACGAAGGGGCATCGGATGCAACTGATCCGAGTGGCTCATTAGAAGATGGATTCCCGGAGAATTCTGAACCCAACAAGTCAAGTGAGCCTGAACGTGATGAAGTCATTTCTGATATGGATTATTTCAAGAGTAAGGTGACAAAAGAGTGGTCTGATTCTGAAAGTGGTGAAGATGACGATGATGACAATGATAGAGATGATCATAGTGATGCTTCTAAAGGTGAAAAGAATTGTGATCCAAGAAATGGTGCTCGAGAGGTAGACCTAGAGGGCAAAGAAGATACTAGTGGAGAGGATGTTACCCATGGAAAGACTAAAGTGAATGTGACCGAGCAAGGGGTGCAATTATCAAAATCAGAAGACAAGAAAGGCGTTTTTGATTCCTGTCGGTTGTTTGTCCGTAATCTGCCGTATACAACCACTGAGGAGGAACTGGAAGAACATTTCAGTCGGTTTGGAAGTATCTCACAAGTTCATATAGTTGTTAATAAAGATACAAAACGATCCAAAGGAATAGCATATATTCTTTACACAGCTCCAGATATGGCAACCAGGGCTCAAGAAGAGTTAGACAATTCAACCTTTCAAGGAAGATTATTGCATGTAATGCCAGCCTTACAAAGTCATTCAGATAAAAAAGGGAACGATGTTTTGAAGGACCAAAGCTCTAAAACCCTCAAACAACAAAGAGAGGAAAAAAGGAAAGCAAATGAAGCTAGCGGAGATACTAGAGCATGGAATAGTCTGTTCATGCGCCCTGATACAGTTGTGGAAAACATTGCTCGGAAATATGGTGTTAATAAAAGTGATTTTCTTGATCGAGAGGCTGATGATCTTGCTGTACGTATTGCTCTGGGAGAGACTCAAGTGATTTCAGACACAAAAAAGGCATTTAAAAATGCTGGAGTGAATATGGAGGCTTTGGAGGAACTTGCTAATAATAAAACAGATGGAATAAAAAGAAGTAATCATGTGCTTTTAGTGAAGAACTTGCCATATGGTTCTACAGAAAATGAACTTTCAAAGATGTTTGGGAAATTTGGTAGTTTGGATAAAATAATTCTCCCTCCAACAAAGACATTGGCACTGGTTGTTTTCCTTGAACCAGCAGAAGCTCGAGCAGCTTTTAGAGGTTTAGCTTACAAGCGTTACAAAGATGCTCCATTATACTTGGAGTGGGCTCCTTCCAATATTCTTAGCCAAAGTTCAACATCTAAAAATAATGAAGTGAATGGTGCAATTGGTGAAAATGATGCCAAGAGGCAGATATTGGAGCAAGTGGAAAGAATAACAGATGTAGATATTGATCCAGACAGAGTACAGGCTCGGTCCCTGTTTGTCAAGAACCTAAATTTTGAGACTACAGATGAAGGTCTGAGGAAACATTTTACAGAACACATGAAAGAGGGAAAAATTTTGAGTGCCAAGGTGAAGAAGCAGTTGAAAAATGGGAAAAATCTTTCCATGGGGTTTGGATTTGTTGAGTTTGACTCCCCTGAAACTGCTACAAATGTTTACAGTGATTTACAGAGGACAGTTTTGGACAGCCATGCTCTTATTTTACAACCTTGTCATGTCAAGAGTGATGGGCAAAAACTAAAGAAAATCGAGAAGGACAAGAGTTCAACAAAATTGCTCATAAGAAATGTTGCTTTTGAGGCAACAGAGAAGGATCTGAGACTATTGTTTAGCCCATTTGGCCAGATTAAAAGCTTAAGGTTACCAATGAAGTTTGAAAACCATAGAGGCTTTGCTTTTGTAGAGTATGTGACTCAGCAGGAAGCAGAAAATGCCATCAAAGCACTTTCAAGCACCCATTTTTATGGGAGGCATCTGAGGATAGAGAGAGCAAAAGAAGGTGAGAGTTTGGAAGAACTGCGAGCTAAAACTGCTGCCCAATTTAGTGATGAACAGAATGGATTTCAAAGTGCTACCAAATTTTCCAAGAAAAGGAAGCAAGTTGACTTCTTAGATGAAGGGAAGATGAAGTTTGAAAGAATGGATGACTATTGA 2508 0.4095 MSRICVKSLPKDVAEDELREFFSRKGGLVTDAKLMRTKDGKSRQFAFIGYRTEDEAREAIRYFNNNFLRTSKIVCEVARKHGDENLPRPWSRHSKKKNDDKVTALAVEKRARAKGQGENSKGGVGVDVDDPQLQDFLQVMQPRVKSKMWANDTIATNKQAVPNDDDEGASDATDPSGSLEDGFPENSEPNKSSEPERDEVISDMDYFKSKVTKEWSDSESGEDDDDDNDRDDHSDASKGEKNCDPRNGAREVDLEGKEDTSGEDVTHGKTKVNVTEQGVQLSKSEDKKGVFDSCRLFVRNLPYTTTEEELEEHFSRFGSISQVHIVVNKDTKRSKGIAYILYTAPDMATRAQEELDNSTFQGRLLHVMPALQSHSDKKGNDVLKDQSSKTLKQQREEKRKANEASGDTRAWNSLFMRPDTVVENIARKYGVNKSDFLDREADDLAVRIALGETQVISDTKKAFKNAGVNMEALEELANNKTDGIKRSNHVLLVKNLPYGSTENELSKMFGKFGSLDKIILPPTKTLALVVFLEPAEARAAFRGLAYKRYKDAPLYLEWAPSNILSQSSTSKNNEVNGAIGENDAKRQILEQVERITDVDIDPDRVQARSLFVKNLNFETTDEGLRKHFTEHMKEGKILSAKVKKQLKNGKNLSMGFGFVEFDSPETATNVYSDLQRTVLDSHALILQPCHVKSDGQKLKKIEKDKSSTKLLIRNVAFEATEKDLRLLFSPFGQIKSLRLPMKFENHRGFAFVEYVTQQEAENAIKALSSTHFYGRHLRIERAKEGESLEELRAKTAAQFSDEQNGFQSATKFSKKRKQVDFLDEGKMKFERMDDY 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1519 835 PANTHER RNA-BINDING PROTEIN 19-RELATED 2 811 - -
Aed3g1519 835 SUPERFAMILY RNA-binding domain, RBD 3 85 IPR035979 GO:0003676
Aed3g1519 835 SUPERFAMILY RNA-binding domain, RBD 701 787 IPR035979 GO:0003676
Aed3g1519 835 SMART rrm1_1 3 76 IPR000504 GO:0003723
Aed3g1519 835 SMART rrm1_1 709 780 IPR000504 GO:0003723
Aed3g1519 835 SMART rrm1_1 609 687 IPR000504 GO:0003723
Aed3g1519 835 SMART rrm1_1 295 368 IPR000504 GO:0003723
Aed3g1519 835 SMART rrm1_1 490 557 IPR000504 GO:0003723
Aed3g1519 835 Gene3D - 481 585 IPR012677 -
Aed3g1519 835 Gene3D - 699 809 IPR012677 -
Aed3g1519 835 CDD RRM4_RBM19_RRM3_MRD1 489 560 - -
Aed3g1519 835 SUPERFAMILY RNA-binding domain, RBD 283 373 IPR035979 GO:0003676
Aed3g1519 835 MobiDBLite consensus disorder prediction 231 270 - -
Aed3g1519 835 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 491 552 IPR000504 GO:0003723
Aed3g1519 835 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 710 777 IPR000504 GO:0003723
Aed3g1519 835 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 610 684 IPR000504 GO:0003723
Aed3g1519 835 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 366 IPR000504 GO:0003723
Aed3g1519 835 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 73 IPR000504 GO:0003723
Aed3g1519 835 Gene3D - 1 123 IPR012677 -
Aed3g1519 835 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 811 - -
Aed3g1519 835 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 608 699 IPR000504 GO:0003723
Aed3g1519 835 SMART rrm2_1 709 780 IPR003954 GO:0003676
Aed3g1519 835 SMART rrm2_1 295 368 IPR003954 GO:0003676
Aed3g1519 835 CDD RRM6_RBM19_RRM5_MRD1 708 782 - -
Aed3g1519 835 MobiDBLite consensus disorder prediction 374 406 - -
Aed3g1519 835 SUPERFAMILY RNA-binding domain, RBD 597 695 IPR035979 GO:0003676
Aed3g1519 835 MobiDBLite consensus disorder prediction 190 217 - -
Aed3g1519 835 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 80 IPR000504 GO:0003723
Aed3g1519 835 CDD RRM3_RBM19_RRM2_MRD1 295 368 - -
Aed3g1519 835 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 489 561 IPR000504 GO:0003723
Aed3g1519 835 MobiDBLite consensus disorder prediction 155 284 - -
Aed3g1519 835 Gene3D - 185 381 IPR012677 -
Aed3g1519 835 MobiDBLite consensus disorder prediction 377 405 - -
Aed3g1519 835 CDD RRM1_MRD1 2 78 - -
Aed3g1519 835 Gene3D - 586 697 IPR012677 -
Aed3g1519 835 MobiDBLite consensus disorder prediction 109 129 - -
Aed3g1519 835 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 372 IPR000504 GO:0003723
Aed3g1519 835 Coils Coil 384 404 - -
Aed3g1519 835 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 708 784 IPR000504 GO:0003723
Aed3g1519 835 CDD RRM5_RBM19_like 608 689 IPR034423 -
Aed3g1519 835 SUPERFAMILY RNA-binding domain, RBD 486 574 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1519 Aed-Chr3 19503148 19511713 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1519 2 83 Eukaryotic Initiation Factors Gene Family AT1G49760 34.146 1.04e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1519 K14787 - gmx:100798742 1386.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1519 3 19503148 19511713 Aed3g1519 3 19503148 19511713 ECH