Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1517 ATGTTGAAGACGAAGGCGTTCCACGGCGCGAACGTGTTCATGTCGCGAAACCTGGTGCCGCCGGAAGTCTTCGACAAGCTACACGACGCCGTTAAAGATAATGGCGCCCAAATCCACCTCTGCTGCGACCCTTCCCGTAACGGTCCCAACGATTACCACATCATCTCTTCAAGCAAACACGAGAAGTTCAACGATCTCAAATCCAAGGGCTGCAAATTGCTCGAATTAGTGGCTGAAATGGGGGGAGTTCTACACACTAAAGCATCATTGGATTTAAACTTCGTCGTTGTGAAAAATGTTTTAGCTGCGAAGTACAAGGTTCATTGTCATTGGGCTTTGAATATATTGAAGAAACCAATAGTCACTTATGAATGGTTAAAACAATGCTCAGATGAGCATCGTGTTGTTCCTCAAGAGTCATACAAGGTCCTTCCTTTCTCTGGGTTAAAGATTTGTGTTACTGGAATCCCAGCAGATAACCGTAAGGAGATGGAGAAGCTTATTTTACAAAATGGTGGAAAATACTCTGCGGAATTGACGAAGAAGATATGCTATTATGGTTTAAAAATGGTGGATATTTGTGTTCTTGACTGTTCTTACACTCCTGAAGGTGACAAATATAAGGTAGCAAAGCGATGGGGCCACATTCATATTGTGACAGGCAAATGGTTCGATCAATCTATTGCTCGAAGAGCATGCCTGAATGAGGAGTTTTTCCCTGTTCAGCATGGATCTGTATCTTCACATAAAGCAACTAGGGACTTAACAATGCAACATAGCCAAGAAAAGGATTTTGGGAAATTGCAATCTGCAGCATTCTCAGGTGCTACAGACTCAAATGTGCAAGTTTTTTCTAGTGCTGAGTTTATGGATAGAGATTTAGAAGCTACACAGTCAGAACACACGTCCTCAGTTTCAAATGCTCCTTTATTTGCTAAGGAGGCAGATGTTGAACCTCCTCCGTTGCAAACCAGCAGTGAATTGAACTTTGATGGTCCTGTTGCTAATGATTCAGAATCTGATGATAATGACCTGTATTTATCAGAGTGCAGAATATTACTAGTTGGTTTTGAAGCTTGTGAAATGCGGAAACTAGTTAATATGGTGCGTAAAGGTGGAGGCTCCCGTTATATGTCTTTTAATGATAAATTGACACACATAATAATTGGGAATCCTACTGAAATGGAAAAGAAGGATGTGAGGAGTCTTGCTGCTTTAGGTGTAATATATGTTGTTAAAACTGCATGGCTTGAAGATTGTGACCGTGAAAAGAAACAAATCCCTGTTCTTAGGAGACACATTGCACATGATCTACTGCATCCAAAAGCAAGCTTGATAAAAGGAGCAGTAACAGGCAGTATGACTATGGATCACGGTAAAGGCTCCAGCTTTCATCAAAGATCGCATCATGTGGAGTTTGAAATTGTAAAGCCAGAAACTTTGGAGAAAAGAAAAGAAGAGAAAAAAGATATGAGTATAAATGGTCACTCATTCAGTAAAGCAACAGGCAGAACTATGCTGCATAACCCACTTCCTGATAATAAATTGAGCTCACAAAGGATGACCCAACATGACTCCAGTGTTCAATACTTGAAGTCAGCAAATGTTTTCAGAGGGAAACTATTCTGTTTCTCAAACTTATTTCCTGAAGACAGGAAATATGATATTGTTCAATGGATAAGTCAAGGGGGAGGAGAGATAATAAGTGGGCAAACAAAACAGAGTGCCAACTATACTATTGAGTGTCATGGTGTAACACCCATGCTGTCAGGTGATTCCAAGAGTTTGTATATTTCCAGTCATTGGATACGATCTTGTTTGGAGGCTGGATCCTTGCTGGATGTTGACAGTCACATTCTTTATTCTCCACTTCCCTGCCGTGTTCCCTTGCCTGGGTTTGAAAGCTTCCGGTTTTGTGTATCACAGTATGAGGAGAAAGATAGAAATCTCCTAAGAAACTTGTGTTTTGTTCTTGGAGTTAAATTTGGGGTGAAGTTGACTAAGAAGGTTACCCATTTGTTGTGTAAATTCGCCAATGGGCCCAAGTATGAGGCTGCTTGTAAATGGGGGATTCAAACAGTTACATCCGAGTGGATATTTGAATGCATCAAACAGAATGGAGTTGTGGCCATTGACCAGTTTTTACCAAACGAAGTCACTGCTCAAGACCGAGAGGCAGGAATTTGTACTGTGAGTCAATTTCCTACCCAGGCTGTCCAAATGATAAGTGATATGTCCTCCCAGTTGTCAAGTCAATCACAAACTTTGAGAGGCATGACAAATAAAAATGTCAGTTGTGGAGTTGATAATCATGAGACCAATTTTAAGATACCAAGTAATTATAGCAAAAAGGCAAGGCTTGTGGAGGAACCTTGCCCGTCCAATAAGATACCTTCAGCATCAAATTCAGGTATTCATGCTGATGTCAAGAATTTTTCTGAAGACAATATGCTTATAGATGCTGGGGAGGTTTGTCATGCTGTTCCTGATGTTGCTGCTGCAATTGAAGACTTGTTAGAGCAGACTAGTAAGATGCATGATCAGAGGTCCCCAGCGCAGACAGGAAAAGATGACAAAGGGGAGGCTTCTCAAGACAGAAGAGCAGGAATATATGATGGTTTTAGTGAAACACAGACAGAATCTCAGGTTGTTAGTTATGAAGAAGATTTATCAGGAAGGCAAATGCTTATAGATAGAGTCCGAACTCGAAACTGGCATACGTACCTAAATTTTAAACCTAATGGATTGCGGAAATCCCTCTCCACTCTCCAGTTGCATGATATTGTGGCTGATGATGTAAGGGCTTGA 2808 0.4103 MLKTKAFHGANVFMSRNLVPPEVFDKLHDAVKDNGAQIHLCCDPSRNGPNDYHIISSSKHEKFNDLKSKGCKLLELVAEMGGVLHTKASLDLNFVVVKNVLAAKYKVHCHWALNILKKPIVTYEWLKQCSDEHRVVPQESYKVLPFSGLKICVTGIPADNRKEMEKLILQNGGKYSAELTKKICYYGLKMVDICVLDCSYTPEGDKYKVAKRWGHIHIVTGKWFDQSIARRACLNEEFFPVQHGSVSSHKATRDLTMQHSQEKDFGKLQSAAFSGATDSNVQVFSSAEFMDRDLEATQSEHTSSVSNAPLFAKEADVEPPPLQTSSELNFDGPVANDSESDDNDLYLSECRILLVGFEACEMRKLVNMVRKGGGSRYMSFNDKLTHIIIGNPTEMEKKDVRSLAALGVIYVVKTAWLEDCDREKKQIPVLRRHIAHDLLHPKASLIKGAVTGSMTMDHGKGSSFHQRSHHVEFEIVKPETLEKRKEEKKDMSINGHSFSKATGRTMLHNPLPDNKLSSQRMTQHDSSVQYLKSANVFRGKLFCFSNLFPEDRKYDIVQWISQGGGEIISGQTKQSANYTIECHGVTPMLSGDSKSLYISSHWIRSCLEAGSLLDVDSHILYSPLPCRVPLPGFESFRFCVSQYEEKDRNLLRNLCFVLGVKFGVKLTKKVTHLLCKFANGPKYEAACKWGIQTVTSEWIFECIKQNGVVAIDQFLPNEVTAQDREAGICTVSQFPTQAVQMISDMSSQLSSQSQTLRGMTNKNVSCGVDNHETNFKIPSNYSKKARLVEEPCPSNKIPSASNSGIHADVKNFSEDNMLIDAGEVCHAVPDVAAAIEDLLEQTSKMHDQRSPAQTGKDDKGEASQDRRAGIYDGFSETQTESQVVSYEEDLSGRQMLIDRVRTRNWHTYLNFKPNGLRKSLSTLQLHDIVADDVRA 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1517 935 ProSiteProfiles BRCT domain profile. 141 241 IPR001357 -
Aed3g1517 935 Gene3D BRCT domain 628 720 IPR036420 -
Aed3g1517 935 ProSiteProfiles BRCT domain profile. 532 620 IPR001357 -
Aed3g1517 935 SUPERFAMILY BRCT domain 599 717 IPR036420 -
Aed3g1517 935 MobiDBLite consensus disorder prediction 843 864 - -
Aed3g1517 935 Gene3D BRCT domain 530 626 IPR036420 -
Aed3g1517 935 Gene3D BRCT domain 145 244 IPR036420 -
Aed3g1517 935 CDD BRCT_TopBP1_rpt2_like 631 706 - -
Aed3g1517 935 Gene3D BRCT domain 334 431 IPR036420 -
Aed3g1517 935 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 7 895 - -
Aed3g1517 935 MobiDBLite consensus disorder prediction 317 341 - -
Aed3g1517 935 ProSiteProfiles BRCT domain profile. 72 143 IPR001357 -
Aed3g1517 935 SUPERFAMILY BRCT domain 344 428 IPR036420 -
Aed3g1517 935 CDD BRCT 72 129 - -
Aed3g1517 935 Pfam twin BRCT domain 149 223 IPR001357 -
Aed3g1517 935 Pfam twin BRCT domain 637 698 IPR001357 -
Aed3g1517 935 CDD BRCT_TopBP1_rpt2_like 145 231 - -
Aed3g1517 935 SUPERFAMILY BRCT domain 142 240 IPR036420 -
Aed3g1517 935 Gene3D BRCT domain 68 144 IPR036420 -
Aed3g1517 935 ProSiteProfiles BRCT domain profile. 342 434 IPR001357 -
Aed3g1517 935 Pfam BRCT domain, a BRCA1 C-terminus domain 534 617 IPR001357 -
Aed3g1517 935 MobiDBLite consensus disorder prediction 484 507 - -
Aed3g1517 935 ProSiteProfiles BRCT domain profile. 633 716 IPR001357 -
Aed3g1517 935 SUPERFAMILY BRCT domain 72 143 IPR036420 -
Aed3g1517 935 SUPERFAMILY BRCT domain 535 622 IPR036420 -
Aed3g1517 935 SMART BRCT_7 630 706 IPR001357 -
Aed3g1517 935 SMART BRCT_7 53 133 IPR001357 -
Aed3g1517 935 SMART BRCT_7 143 231 IPR001357 -
Aed3g1517 935 SMART BRCT_7 344 424 IPR001357 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1517 1 904 Core DNA Replication Machinery Family AT1G77320 43.120 0.0 729
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1517 K10728 - gmx:100804966 1482.23