Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1506 ATGGGGAGGGGCAAGATTGAGATTAAGAGGATTGAGAACTCAAGCAACAGGCAAGTTACATACTCAAAGAGAAAGAATGGGATCCTAAAGAAGGCTAAGGAAATCACAGTTCTATGTGATGCTCAAGTTTCTCTTATCATCTTTGCTGCTTCTGGAAAGATGCATGACTACATCAGCCCTACTACAACGTTGATTGACATATTGGAGAGGTACCACAAGACTTCAGGGAAGAGGCTTTGGGACGCAAAGCATGAGAACCTAAACGGAGAAATTGAGAGACTCAAGAAAGAGAATGACAGCATGCAAATTGAGCTCAGGCACTTGAAGGGAGAGGATATCAACTCTCTTAACTACAAGGAGCTGATGGCCTTAGAGGATGCCTTAGAAACTGGTCTAGTCAGTGTCCGAGAGAAACAGGCAAATATTAATCTTCAAGAATATGCTATTTTTTTTCTTTCTGGTTTGAGCTACATGGATGTATACAGGATGTTCAGGAGAAACGACAAGATCTTGGAGGAGGAGAACAGGGAACTTAATTTTCTCTGGCAACAACGTTTGGCAGTGGAAGGTGCAAGAGAAGTGGACAACGGGTTTGATCAGAGCGTAAGGGATTACAATAATTCCCACATACCATTTGCCTTTCGTGTTCAGCCTATGCAGCCAAATCTTCAAGAAAGGATCTAA 684 0.424 MGRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEITVLCDAQVSLIIFAASGKMHDYISPTTTLIDILERYHKTSGKRLWDAKHENLNGEIERLKKENDSMQIELRHLKGEDINSLNYKELMALEDALETGLVSVREKQANINLQEYAIFFLSGLSYMDVYRMFRRNDKILEEENRELNFLWQQRLAVEGAREVDNGFDQSVRDYNNSHIPFAFRVQPMQPNLQERI 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1506 227 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aed3g1506 227 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Aed3g1506 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aed3g1506 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aed3g1506 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aed3g1506 227 ProSiteProfiles K-box domain profile. 84 188 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aed3g1506 227 Gene3D - 13 102 IPR036879 GO:0003677|GO:0046983
Aed3g1506 227 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aed3g1506 227 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Aed3g1506 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Aed3g1506 227 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Aed3g1506 227 PANTHER MADS-BOX TRANSCRIPTION FACTOR 157 227 - -
Aed3g1506 227 Coils Coil 77 111 - -
Aed3g1506 227 Pfam K-box region 82 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aed3g1506 227 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 142 - -
Aed3g1506 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 157 227 - -
Aed3g1506 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1506 Aed-Chr3 19343979 19348842 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1506 1 144 MADS-box Gene Family AT5G20240 68.056 8.67e-68 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aed3g1506 K-box 2.4e-16 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1506 3 19343979 19348842 Aed3g1506 3 19343979 19348842 ECH