Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1500 ATGGATCAACACCACTTCCTCCACCACCACTACCACCACCCTCAGGAACATCGCAATCGATACACCTCCCTCACACCTCACAGCCACCACACTCCGCCGGCCCCAAACCTCCCTCCGCCGCTTTCCTACCACCGCACGCCGCAACCCTACACCCCTCCCACACCTCAACCCCAACAATTTCCTTATACACCCGTCCCACACCGCACCCTAGAAGATGAACCACAGCCACAGCTACAATCACAGCAACAGCGTCATATCCCCTACGACCTTCTCCCTCGCCACACCTCCGCCACCACACTCACCTGGAACCCTAACCCTAGAACCGACGATTTCGACCGCGATTTCCACCGCCACTGCCTCCCGCCGCCGCCCCCGATCGAGTCGCTCCGCTACGATCCCGACCGCCACCACCACCACAACGACCACCACCGCGTCGTCGTCGATCCGTACGAGCAAAACCCCAGGGAGATTCCCCCGTGGAGGGGCGGCGGCGGTAGTAACTACCGCCACGTGCCTGGCCAGGGCGGCGATGTGGACCCCACTCCCTATGTCCGCGTCTACACCGTGGAGTCCGACGCCGACGTGGCGGGGAGAACCTCCAGTAAGAGGTGGGTGATGAGTGACAGAGACAGAGGAAGAGAGTTGCACGAGTCTTCTTCTGGTTTAGTGAGTAGTAATTCTAATTCTAACAATGAGAAATATTATCATGGTAATTCTGAGAATAGTATGATGGGTAGGTATAGTAGAGGGAATAGTAGAGAGTGTGGTGGTCATACTCATACTCATGAATTCGCGCGCACTCCTCCCAAGAAACAGGTGCAGAAGAAGAGTGCTCTTCTTAGGCTTCAGACTGTTAAACCTAATAACAATCATAGGAACCGTGAGTCTGAGCAGATGATACGGTACCCGGGTTATGGTTCTGAGTGTGGCAATGGTTTTTTCAGGGGAAAGGAGCAGTATTTGGGTCATGGGGTGGAGAGGGATGAGAGGGAGGGCAGCCCTGTTGAGATTGATATTTCTTTCGAGTCCAATTCGCTGGTGGCGAAGGCGAAGGCAGTTGTGGCACCACCTTCGGTGTCAGTTCCTGATTTTAATGTTAATCCTGTTTTGGATTTGGGTTATGGGGAGAGGAGTAAGAGGGTTTCCGGCTCTGATGGTGATTATTCTGGTGTGCAATTGCAGCAACCAGTCAGGATGTCTTCGGTTGTAGTTGTGGACTTGAATAGGTCGCCTAAGAAAGGGAATGATAGCTCTGGTTCGGGGAAGGAGGTTATTGTGCAGAAGAAGAAGAATGTTGATGATAGTTCTTCCCGGTCTCACCCCAGGGGAGCTGATGATTCCCGTGGGAAAAAGGAGGTGCTGAATTCAGTTAAAGTTGGCACTGCTGGTTCTGGTAAATTGGCTTCGAGGGTTGTCAAGAAGAAGAAAATTGTTAAGAGAGTGGTGAAGAAAGGTACTGTAAATTCAAAGACAGCTCTGTCAAATTCACTACCTGCTAAAATGCTTTCTGGAACTGTGAAAGTAGAGAGTGTTGCACATAGTTCATCAACTGCCTCTGGTCCTGAGAAAATTGAAGCTAATTTGGTTGAGAAAAGCAACACTGTTGATGAGGTGACTGAGCCAGACTTTTTGCACCCTTTACCAAAGGAAGGGAGTGTACTGAAAGATCATAAAGAGGTAGGCTTATTGCAGCTGACTTTGGGGCCAGATTCCAGGTCACAAGAGTGTAAGAGTGACAAAGATTCTGATATTGGGAAGGTATCCAGGTTTGAAAGTGATGGAAACATTTCATATTCTGCATCTTGTGCTTCTAATAATGAAGCTAAAATGAGTGATTCTAATTGTTTAGATGCCAATGATTCTGTCCATGATAATGGAAATACTATTTCTGTCCATGATAATGCAAATGCATCTGATTGTTTAGATGCAAATAATTCTGTGCCAAATACTGACAAGGTTACTAAATCATCAAGTGGAAGTAATATTTCTGTAGTCACTCACATGGATTATGATAATAAGCAATTATGTCAGAATGAAGTGTCTCTATCACCTGGGAAATATTCAAATGTAGGATCCCCACAGAATAGGAATCTCGTAGATGTAGGGCATGAACTTTTGAAAAGCAGTGATACTTTTTCATGCTCAGGAAAAACTAGGGTTCAGGATGGTCTAGATTGCCTACAACATGCCAGTGCACTGAAGCACAGTTCTGATAATGGATCATCTAATTTAGAAGATAGTACTGTGCATGATGCTGGAAAGCAGGTGTCCTCTGGTGATGTCATCAAATCCCCTGAGAATTGTGAGACAGAAAAAGCATTCCTAAATTCTAATATTTCAGCTGGATCTGGTGAAGGGGACACGAAAAAGATAAAAAAGAGAAAAGGTAGAACACAATTAAAAATTTTGAGTTCAGAGTTGGAGTGCTTATCTCCAGAACATGTAAATCCAGATAGCCTTGCAAATACTGCAGATGGAGGCTCAAGTCCGTTGTTGAAAGGTCCATCTCCTTCAGAAGTTTTAGGGCAACCTGTTCAAAGATTAGATTTTAACTCACTATCTGGCCTGGATGGGGTTACTGCTTTATATGGGAAAGGGGGTGTTTTAAAGGATCAGTTTTATGTTGGAAATAATGACAATGATGATGCAAATGAGGTTTCACCTGCTTCTAAAAGGAAAAAAGTCACAGCTAACCCAAATTTCACTCAATGTCAATCAGAATTCAGTGCTGTGACTGTGCCTTCCACCACATCTAATGCTGAAGCTCCTATGAGTTTCAGTGATAACCAAGAACATCAGAAAGAAGTTGCTTTTTCAAGCATGGGTATGTGTATTCTGTCTACTGCTTCAGAGGATATTACTAAAATGTCTGACAATATTTTGGCTGGAGGATCTTTTGAGTCTATTGATGCAAATAAGGAAACCATGGGTTCTGGGCATTTGGAATTGCAGCACTCGGATATAGTCTCTTTTTCACCATGTGAGGACTTGGCATTTCCTAATGTTCAGTTCTCAGCATTGGAAGGTGGGTGCAAAGAGAACATTACTCCAATTGTGCCTACAAGTAATATTCAAATGGATGTTTTGGCTGTTGGAAATATAGTGGGAGAAAAGTCTGATATACAGGCTGTTGAAGAAAATTACCACTATAGAGAACATGTACAAAGGTCAAGAGCTGATATGGAACCTAATGATCACAATATGTCCTGTCCAGCCAGTGGTGATGAAGTCACTACAAGTAATGTGAATGACGAATTGATTGAGGATGCACCTGATGCATTATCAGATATGTTTTCTCAAGGGATGGCATCTGAAGTACCGGATAGAAGGGTTTTAGAACTTACAGCAATCAACGATGAAAATATTTGTGGGGTTGAAGAAAATCCAGATAACAACATTTCTATGGTTGGACATGGTTCTGACTTAAATACTTCATCAATACAGAAGACTAAAAGAAACATGAAGTCAGATCATGCAATTGAACATAGTAACCTGATCACAAAGAAGACAATGTCAGAATCATCCCAAGTTTCTTCCAAAGTTACAACTCAGGCTCTAAATTCATATCGTTCTGGGTTGAGTGGGACCAAAAATCAGTCAGGTAGTGTCATTCCCAAAAATTTTCCAGGTCATTCTTTCTCCTTTCCAAAGACATCTGCCTCTTCACCTCATGTATCAAAGCCTCGAACTTGGCATCGCACAGTTAATAATCCTCCCACTTCTCTACTTAGAATCAAGCCTTCACTAGGAACAGTTCCTCCCAAAAAAGGGAACTTTCAAAATACCTCTTATGTTCGTAAAGGTAACAGTCTTGTAAGGAAACCTACTCCAGTTTCCACTCTACCTCAAATCTCCTCTGTTTATCAGACATCTTTGGGCTTAGATGTAATATCAAAAAGCATTAAATCTGAAAGCAGGGCTGATGTGACAGACAAAGCAATGTACATGAGAACAGGAGCAACGAATGCTCAGCAGCAGAGAACACCTCCACTACCAATTGACACCAAATCAGAGGAAAATATATCTTCCCCATTGGTAGAACCTCCTTCTGGTGGTTGCTGTGAAAATGCATCAGATCCTAGGAAATTTATAGAAAACGATATTATTGCACCAAACTCTTCTGAACTGAAGCATTATGAAAGTCCAGAAAATCAACCTGGTCCATCTGATAATGGGGAGAACCAAGGCGAAGCAAATGATGGAAATGTTTTTCCTTTGAATACAAAGAGAATAGTGTATTTAAAGCCCAAAACAAATCAATTGGTTGCAACATCAAATTCTTGTGATGTTTCTGTCACTACTGATGACAATGGCTACTACAAGAGAAGAAAAAATCAATTGGTTAGGACTACATTTGAAAGCCATATCAACCAGACAGGTGCAATGCCCAATAACACGACAAATCCTGATGGACAAGGAACAAGTAATGCTCTTTGCAACAGGAGGTTTAGTAAGAGGCGGTCACATAAGGTTGGTAGGAGTACAAGAGCCTCATTAGTGTGGACACTCTGTAGCAAAAATTCTTCTGAAAATGACAGGGACTCACGACATTATCAAAGGGTTTTACCTCAATTGTTTCCATGGAAAAGAGCAACATTTGCTTCAAGCTTGAATAACAGTTCTTTATCTGCAATCAGCAAAAAATTGCTTCAGTTGAGAAAGAGGGATACAGTTTATACTAGGTCAATCCATGGGCTTTCACTTCGGAAATCCAGAGTTTTAGGTGTTGGTGGTTCTAGTTTAAAATGGTCTAAATCCATTGAGAAGAACTCAAAGCAAGTTAATGAGGAAGCCACACTTGCTGTTGCTGCAGTAGAGAAGAAGAAGAGAGAACAGAAAAATGTGGTTTGCATCAGTTCTCAGTCAAAGAGAGAACGTATATTTCGTATTGGTTCAGTTCGCTACAGAATGGATCCTTCCAGGAGGACACTTCAGAGGATTTCAGATGATGAATCCCTGTCCTCTGCATCTACCTGTTCAGGTTTGGCTTCCAAAAGAGCTTATGTTCCAAGAAGATTAGTGATCGGAAACGATGAATATGTCCGAATTGGCAACGGTAACCAGCTTATCAGGGACCCAAAGAAACGAACTCGGAAATTGGCAAATGAAAAAGTTAGATGGAGCTTGCACACTGCCAGACAGAGATTGGCGCGGAAGCAGAAGTATTGTCAGTTTTTTACTAGATTTGGGAAATGTAAAAAGGATGGAGGGAAGTGTCCTTATATTCATGATCCCTCAAAAATCGCTGTCTGTACTAAGTTCCTGAATGGTTTATGTTCTACTCCCAACTGCACATTGACTCATAAGGTTATTCCAGAGAGAATGCCAGATTGTTCTTATTTTTTGCAAGGCTTATGCTCTAACAGGAATTGTCCATATAGACACGTCAATGTGAACCCCAAGTCATCTATTTGTGAAGGATTCCTCAAGGGTTATTGTGCTGATGGGAATGAGTGTCGGATGAAGCACAGCTATGTCTGTCCTACTTTTGAAGCAACAGGAACCTGTACTCAAGGAACCAAATGCAAATTTCATCACCCAAAAAAACCAACTAAGGGCAAGGGAAAGAAAAGGAAGAGAACTGCAGATCAGAACAACAGTAGAGGGCGTTATTTTGGTTCTATTCCTGCTGATATTTCTGAATCTGGGATGATGGTGGCAGCTCTAAAGCGACATAGACAGAGTGGTGAACTTGAAGAGGAACTTTCTGACTACATGACACTTGATGTTGTGAATGAAGAAGCTGCAGACACCGTCGATCAATCATTTGAGCTAGCAGCTTCATATGACGACGATTCCTTGGATTTTCAGTTGGATGATTTTGATGAACTTATTAAACCAGTTCTTCTGTTGAGAACAAACTTCACATTGCAGTCACCTCAGTCTAGTAGCCTCCAATCTTAG 5904 0.4287 MDQHHFLHHHYHHPQEHRNRYTSLTPHSHHTPPAPNLPPPLSYHRTPQPYTPPTPQPQQFPYTPVPHRTLEDEPQPQLQSQQQRHIPYDLLPRHTSATTLTWNPNPRTDDFDRDFHRHCLPPPPPIESLRYDPDRHHHHNDHHRVVVDPYEQNPREIPPWRGGGGSNYRHVPGQGGDVDPTPYVRVYTVESDADVAGRTSSKRWVMSDRDRGRELHESSSGLVSSNSNSNNEKYYHGNSENSMMGRYSRGNSRECGGHTHTHEFARTPPKKQVQKKSALLRLQTVKPNNNHRNRESEQMIRYPGYGSECGNGFFRGKEQYLGHGVERDEREGSPVEIDISFESNSLVAKAKAVVAPPSVSVPDFNVNPVLDLGYGERSKRVSGSDGDYSGVQLQQPVRMSSVVVVDLNRSPKKGNDSSGSGKEVIVQKKKNVDDSSSRSHPRGADDSRGKKEVLNSVKVGTAGSGKLASRVVKKKKIVKRVVKKGTVNSKTALSNSLPAKMLSGTVKVESVAHSSSTASGPEKIEANLVEKSNTVDEVTEPDFLHPLPKEGSVLKDHKEVGLLQLTLGPDSRSQECKSDKDSDIGKVSRFESDGNISYSASCASNNEAKMSDSNCLDANDSVHDNGNTISVHDNANASDCLDANNSVPNTDKVTKSSSGSNISVVTHMDYDNKQLCQNEVSLSPGKYSNVGSPQNRNLVDVGHELLKSSDTFSCSGKTRVQDGLDCLQHASALKHSSDNGSSNLEDSTVHDAGKQVSSGDVIKSPENCETEKAFLNSNISAGSGEGDTKKIKKRKGRTQLKILSSELECLSPEHVNPDSLANTADGGSSPLLKGPSPSEVLGQPVQRLDFNSLSGLDGVTALYGKGGVLKDQFYVGNNDNDDANEVSPASKRKKVTANPNFTQCQSEFSAVTVPSTTSNAEAPMSFSDNQEHQKEVAFSSMGMCILSTASEDITKMSDNILAGGSFESIDANKETMGSGHLELQHSDIVSFSPCEDLAFPNVQFSALEGGCKENITPIVPTSNIQMDVLAVGNIVGEKSDIQAVEENYHYREHVQRSRADMEPNDHNMSCPASGDEVTTSNVNDELIEDAPDALSDMFSQGMASEVPDRRVLELTAINDENICGVEENPDNNISMVGHGSDLNTSSIQKTKRNMKSDHAIEHSNLITKKTMSESSQVSSKVTTQALNSYRSGLSGTKNQSGSVIPKNFPGHSFSFPKTSASSPHVSKPRTWHRTVNNPPTSLLRIKPSLGTVPPKKGNFQNTSYVRKGNSLVRKPTPVSTLPQISSVYQTSLGLDVISKSIKSESRADVTDKAMYMRTGATNAQQQRTPPLPIDTKSEENISSPLVEPPSGGCCENASDPRKFIENDIIAPNSSELKHYESPENQPGPSDNGENQGEANDGNVFPLNTKRIVYLKPKTNQLVATSNSCDVSVTTDDNGYYKRRKNQLVRTTFESHINQTGAMPNNTTNPDGQGTSNALCNRRFSKRRSHKVGRSTRASLVWTLCSKNSSENDRDSRHYQRVLPQLFPWKRATFASSLNNSSLSAISKKLLQLRKRDTVYTRSIHGLSLRKSRVLGVGGSSLKWSKSIEKNSKQVNEEATLAVAAVEKKKREQKNVVCISSQSKRERIFRIGSVRYRMDPSRRTLQRISDDESLSSASTCSGLASKRAYVPRRLVIGNDEYVRIGNGNQLIRDPKKRTRKLANEKVRWSLHTARQRLARKQKYCQFFTRFGKCKKDGGKCPYIHDPSKIAVCTKFLNGLCSTPNCTLTHKVIPERMPDCSYFLQGLCSNRNCPYRHVNVNPKSSICEGFLKGYCADGNECRMKHSYVCPTFEATGTCTQGTKCKFHHPKKPTKGKGKKRKRTADQNNSRGRYFGSIPADISESGMMVAALKRHRQSGELEEELSDYMTLDVVNEEAADTVDQSFELAASYDDDSLDFQLDDFDELIKPVLLLRTNFTLQSPQSSSLQS 1967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1500 1967 MobiDBLite consensus disorder prediction 1377 1404 - -
Aed3g1500 1967 ProSiteProfiles Zinc finger C3H1-type profile. 1717 1746 IPR000571 GO:0046872
Aed3g1500 1967 MobiDBLite consensus disorder prediction 218 242 - -
Aed3g1500 1967 ProSiteProfiles Zinc finger C3H1-type profile. 1772 1798 IPR000571 GO:0046872
Aed3g1500 1967 MobiDBLite consensus disorder prediction 1123 1142 - -
Aed3g1500 1967 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 1827 1848 IPR000571 GO:0046872
Aed3g1500 1967 MobiDBLite consensus disorder prediction 31 62 - -
Aed3g1500 1967 ProSiteProfiles Zinc finger C3H1-type profile. 1821 1849 IPR000571 GO:0046872
Aed3g1500 1967 MobiDBLite consensus disorder prediction 1319 1344 - -
Aed3g1500 1967 Gene3D - 1799 1861 - -
Aed3g1500 1967 MobiDBLite consensus disorder prediction 1458 1477 - -
Aed3g1500 1967 MobiDBLite consensus disorder prediction 1319 1358 - -
Aed3g1500 1967 MobiDBLite consensus disorder prediction 734 763 - -
Aed3g1500 1967 MobiDBLite consensus disorder prediction 1377 1402 - -
Aed3g1500 1967 Gene3D - 1744 1798 - -
Aed3g1500 1967 SMART c3hfinal6 1717 1745 IPR000571 GO:0046872
Aed3g1500 1967 SMART c3hfinal6 1799 1825 IPR000571 GO:0046872
Aed3g1500 1967 SMART c3hfinal6 1746 1770 IPR000571 GO:0046872
Aed3g1500 1967 SMART c3hfinal6 1826 1848 IPR000571 GO:0046872
Aed3g1500 1967 SMART c3hfinal6 1772 1797 IPR000571 GO:0046872
Aed3g1500 1967 MobiDBLite consensus disorder prediction 207 242 - -
Aed3g1500 1967 MobiDBLite consensus disorder prediction 1125 1142 - -
Aed3g1500 1967 MobiDBLite consensus disorder prediction 813 842 - -
Aed3g1500 1967 SUPERFAMILY beta-sandwich domain of Sec23/24 14 99 - -
Aed3g1500 1967 MobiDBLite consensus disorder prediction 1214 1240 - -
Aed3g1500 1967 MobiDBLite consensus disorder prediction 408 458 - -
Aed3g1500 1967 Coils Coil 1595 1615 - -
Aed3g1500 1967 MobiDBLite consensus disorder prediction 1 83 - -
Aed3g1500 1967 MobiDBLite consensus disorder prediction 1843 1873 - -
Aed3g1500 1967 MobiDBLite consensus disorder prediction 426 453 - -
Aed3g1500 1967 MobiDBLite consensus disorder prediction 1843 1859 - -
Aed3g1500 1967 PANTHER CCCH ZINGC FINGER 880 1953 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1500 1723 1847 C2H2 Transcription Factor Family AT2G32930 32.061 5.41e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aed3g1500 zf-CCCH 3.6e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1500 - - gmx:100788859 3013.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1500 3 19275180 19283525 Aed3g1500 3 19275180 19283525 ECH