Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1493 ATGGGAGCTGAGGATGGGACTAGCAATGGTGATAACAGTGAACGGGCTGAGAGGTTGGATTCTGAAGATGGGGATAGTGGGGGGAGAATTTTAGGTGGAAATGGTGTTGTAGAAGGCGGAGAAGACTGGGGCTTGAAGGATGGATCTGTGAATAATGGGGTGGCGATTGAAGGTGAAGGTGGAGATGGTGTTGCTGAAGGCAAAGAAGTTCAGGGCTTCAAGTGCAAAGCTGTAAATAATGGGGTGACAATTGAAGGGGGAAATGGTGTTACTGGAAGTAAAGAAGTTTGGGGTTTGAAGAATGGAGCTGTAAATACTGGGTTTACAGTTGATGGTGGAAATGGTGTTGCTGAAGGTGAAGTTTGGGCCTTGAAGAATGAAGTTATGAATTGTGGGGTGGAAATTGCTGATGCTAATGGTTTTGCTGAAGATGGAGAGGTTTCTGGATCAAAGAATGAACTTATTGGGTTGGCAATTGCTAATGGGAATGGTGTTGCTAAACGTGGAGAAGTTTGGGGATCAAAGAATGAAGCTGTAAATAATGAGGTGGCAATTGCTGATGGGAATGGTGTTGGTTACAGTGTAGAAATTCAGGGCTCAAAGAATGAAGCTGTAAATAATGAGATGGTAATTGCAGATGGGAATGGTGTTACTGAAGGTCAACAGAATCACTGCTTGAAGAATGGAACTGTAGATAATGTAGTGGCAATTGCAGATGGGTTTGGTATCGTTGAAGGGAACGGTGCAGTTGAAGGTTTTCGAACATATAAGAGGCGCAAACATGTAAAGTCGAGTTCAGAATTTAAAGTCCAGGAGAGAAGCAGAAAACACATGGAAGCTGCAAGTCACCTGTCAGACCAGGTGGTGAAGAAACCATGTGATTTAGCTGTTGGCAACACTTCAAAAGATCATTCACATGACCATTGGGGGAATGTTGTACTAAAGCATTTATATCATTCATTAGGCAATGATAATGGTGGCATGGAGTGGTGTATAAGGGAAGCACTCACGAGTCGTCCTAAAATCAGTTGTGCCACTACAATGACGGAAGCTTTTAAAATTGACAAGGATGGTCAAGAATGCTCTCCGGGATTAGAGTGTTTGTTTTGTAGATTACAGAGTGAAGCTAATGGACATGAAAATGTTGTGCACAATGGATTTTCTAGTGAGTCATATGGCTGCGGTGCAACTGAGAGATGTCAGCATGTGTTCCGTGATATCTTAGCCTCTGAGAAGTTCAGTTCATTATGTAAAGTGCTACTAGAAAATTTCCAAGGAATGAAACCTGAAACTGTATTTGACTTTAGTTTGATAAACTCAAGGATGAAAGGGCAAGCTTATAAACAATCACCTACACTTTTCTTATCAGATGTTCAACAGGTTTGGCGAAAGCTTCAAAATACTGGAAATCAGATTGTTGCTATCGCCAGGAGCCTCTCCAACATGTCAAAAGCTTCCTTCTGTGAGCAGGTGGGAATTTCAGCGCAGAGCTCCTTTGAAGATGAAAAGCAAGTGCTCTGTAACCAGGAATCCATCTCTCACATGAAACCAGAGCAATGTGTTGCATTCAAAGTTGGTACTTGCTGGCATTGTGAAGACAAAGCAGATGGGACAGACTGTCTGGTTTGTGATTCATGCGAGGAGATGTATCATCTGTCCTGTATTGAGCCTGCTGTGAAAGAAATACCCCACAAAAGCTGGTTCTGTGCCAATTGTACTGCTAATGGAATTGGACATCGACACGAGAATTGTGTGCTGTGTGAACGGTTGAATGTCCCAAAGACCCTGGACGGCATTGTTGGTGAGGAAAACATCCCTACAAATGAGGAAATAGTGAATGAATTGGAAGAGAATTCAAATTGTACTTATGATGATGGGAGAAACTCATCCGACTGCAACATTTGTAAAATGGTGGTGGGTGGTGAGAAAATAAAAATCTGTGGTCACTCTTTTTGCCCCAGTAAATACCACCATGTAAGGTGTTTGTCAAGTAAGCAGCTTAAGTCATATGGTCACTGTTGGTATTGCCCTTCTTGTATATGCCAAGTTTGCCTCACTGACAAAGACGATGATGAGATTGTACTCTGCGATGGCTGTGATCATGCATACCACATCTACTGTATGACACCTCCACAAAATTATATTCCAAAAGGAAAATGGTTCTGCATAAACTGTGATGCAGGGATACAAGCAATACGCCAGGCAAGAATGGCGTATGAGAGTAACAAAGGGAGAGTTGGTCAGAATGGTCCAAACCCAAATGATGAAGATATGGACAAGAAATGGAGCAAAAAGCGAGGACGGGAATCAGACAAAGTTGGAGGAATGATGGACATGCTTATAACTGCAGCAAATACTCTGAATTCTGAAGAGGACATAAACGCAATGCAGATTGACTCAAAGAAAACATTAACATGA 2418 0.4222 MGAEDGTSNGDNSERAERLDSEDGDSGGRILGGNGVVEGGEDWGLKDGSVNNGVAIEGEGGDGVAEGKEVQGFKCKAVNNGVTIEGGNGVTGSKEVWGLKNGAVNTGFTVDGGNGVAEGEVWALKNEVMNCGVEIADANGFAEDGEVSGSKNELIGLAIANGNGVAKRGEVWGSKNEAVNNEVAIADGNGVGYSVEIQGSKNEAVNNEMVIADGNGVTEGQQNHCLKNGTVDNVVAIADGFGIVEGNGAVEGFRTYKRRKHVKSSSEFKVQERSRKHMEAASHLSDQVVKKPCDLAVGNTSKDHSHDHWGNVVLKHLYHSLGNDNGGMEWCIREALTSRPKISCATTMTEAFKIDKDGQECSPGLECLFCRLQSEANGHENVVHNGFSSESYGCGATERCQHVFRDILASEKFSSLCKVLLENFQGMKPETVFDFSLINSRMKGQAYKQSPTLFLSDVQQVWRKLQNTGNQIVAIARSLSNMSKASFCEQVGISAQSSFEDEKQVLCNQESISHMKPEQCVAFKVGTCWHCEDKADGTDCLVCDSCEEMYHLSCIEPAVKEIPHKSWFCANCTANGIGHRHENCVLCERLNVPKTLDGIVGEENIPTNEEIVNELEENSNCTYDDGRNSSDCNICKMVVGGEKIKICGHSFCPSKYHHVRCLSSKQLKSYGHCWYCPSCICQVCLTDKDDDEIVLCDGCDHAYHIYCMTPPQNYIPKGKWFCINCDAGIQAIRQARMAYESNKGRVGQNGPNPNDEDMDKKWSKKRGRESDKVGGMMDMLITAANTLNSEEDINAMQIDSKKTLT 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1493 805 MobiDBLite consensus disorder prediction 10 25 - -
Aed3g1493 805 Gene3D - 418 576 - -
Aed3g1493 805 SUPERFAMILY FYVE/PHD zinc finger 525 573 IPR011011 -
Aed3g1493 805 MobiDBLite consensus disorder prediction 1 42 - -
Aed3g1493 805 SMART PHD_3 683 726 IPR001965 -
Aed3g1493 805 SMART PHD_3 527 573 IPR001965 -
Aed3g1493 805 SMART PHD_3 631 680 IPR001965 -
Aed3g1493 805 ProSiteProfiles Zinc finger PHD-type profile. 525 575 IPR019787 -
Aed3g1493 805 ProSiteProfiles Zinc finger PHD-type profile. 678 728 IPR019787 -
Aed3g1493 805 MobiDBLite consensus disorder prediction 754 770 - -
Aed3g1493 805 PANTHER D4, ISOFORM A 311 791 - -
Aed3g1493 805 MobiDBLite consensus disorder prediction 742 770 - -
Aed3g1493 805 Pfam PHD-finger 528 574 IPR019787 -
Aed3g1493 805 Pfam PHD-finger 680 726 IPR019787 -
Aed3g1493 805 PANTHER HISTONE ACETYLTRANSFERASE 311 791 - -
Aed3g1493 805 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 622 731 IPR013083 -
Aed3g1493 805 ProSitePatterns Zinc finger PHD-type signature. 528 572 IPR019786 -
Aed3g1493 805 SUPERFAMILY FYVE/PHD zinc finger 680 731 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1493 Aed-Chr3 19194889 19213807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1493 680 743 C2H2 Transcription Factor Family AT3G01460 50.000 3.31e-14 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aed3g1493 PHD 1.1e-12 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1493 - - gmx:100786712 1313.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1493 3 19194889 19213807 Aed3g1493 3 19194889 19213807 ECH