Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1487 ATGGGTTTTCTATCAAAGCTTCTGTTCCTCCTTCTGCTTCCAGTTATCCCAGTGGCAGCACAAACAGCACCGCCGCAACCCTTTCCGAACTGCACAACAACCTGCGGCTCCCTCGAAATCCCCTACCCATTCGGAACAACCGTAGGTTGTTACCTCAACCCCTCGTTCCTCGTCACGTGCAACCAAACCAACACCTCTACTTCTGCTGCAACACCACCAACACCATTCCTGCGACGCAGCACCATCCCCGTGCTAAGCATCTCACTCCACGGCGAAATGCGCATCACCATGCCGTCTGGCATAGCCGAAGACTGCTATAACAGCAGCGGCGCACCCCTCACTGAGATTCTGGGTTCCCTCAACTTGATCTCTTTCTACTTCTCGTCCGACCGAAATAGGCTGGAAGACATTAGGGAAGCTAACGACGGTGATGGCGGTGGCTGCTCCGGCAGCGGCTGTTGCGAATCTCGAATACCTAGCGAACTCTCCACGGTGTCGTTCGGTTCTAGTGCTCCTATGAATAACCACACCCTTGTGCATGATTTCAACCCGTGTGGATATGCGTTTCTGGTGGAAGAAGGAGGTTACAATTTCTCGTCTGAGGATCTGAAAAACTTGACTCAGAGAACGTTTCCGGTGGTGCTTGATTGGGCGGTGGGGAATCAGACGTGCGAGGAAGCGGAGGGGAACCTCACGAGCTACGCGTGTGTGGCGGAAAAAAGTTACTGTTACAATTCAACCAACGGGCCTGGCTACCGTTGCAACTGCTCCGATGGGTTTCAGGGAAACCCTTACCTTCTTCACGGCTGTACAGAAATTGATCAATGCATGGAAGCAAAGGATTGCACGAATGAAGCAAAATGCCAAAGTTTTCTTGGGGGCCACAATTGTTCGTGTCCAGAAGGCCAAGAAGGAGATGGGAAAATTCAAGGAACAGGGTGTAACCCCAAATCAAATTCTAATTCCCGGACAATTTTCATATTGATAATAGCTATGAGTGTGAGTGTAGGTGTCTTAGCACTACTTATGGGAAGCTTTTATGTATATTGGGGGATGAAGAAAAGAAAGCTCCTAAAACTCAAACAAAATTTTTTTCTTCAAAATGGAGGCATATTGTTACAACAACGAATAGCCAATCAAAGAGGATCATCAAATTCAATTGAAACAGCCAAAGTTTTCACAGAAGAGGAGCTCAAGAAAGCCACCAACAATTTTGATGAAGGAAGAGTCCTTGGCCAAGGGGGCTATGGAACGGTCTACAAAGGTGTATTACCTAGTAACAATAAGGTAGTAGCCATAAAAAAGTCCAAAATCAGTGACCCGGGCCAAATTGAACAATTCATCAATGAGGTAGTTGTCCTTTCCCAAATAAATCATAGGAATGTGGTAAAACTCTTAGGTTGTTGTTTAGAGACGGAAATCCCCTTGCTTGTTTATGAATTCATTCCTAGTGGTACCCTCTTCATGCATCTTCATGATGATCAAGGGCAATCTTTGAGACTTTCTTGGAAAGCACGTTTAAGAATAGCAGCAGAAACTGCTGGTGCCCTAGCATACTTGCACTCGGCTATTTCTACACCAATCATACACCGAGATGTGAAAACTACTAACATACTGTTAGACTCCGATCTAACTGTAAAAGTTTCTGATTTTGGAGCTTCGAGGCTGGTTCCTTTGGACCAAACTCAATTGACAACATTAGTGCAAGGGACATTAGGGTATCTAGACCCCGAATACTTCCACACAAGCCTGTTAACCGAGAGGAGTGATGTCTATAGCTTTGGAGTTGTTCTAGCCGAGTTACTCACCGGTGTGAAGGCACTTTCTTTTGAAAGGCCGGAGAATGATAGAAACCTAGCAGTGTACTTTGTTACTTCAATGAAAGAAGGTAGATTACTTCATATTGTGGATAAACACATAGTAAATGAAGTAAATGTTGAGCACCTAACAGAAGTTGCTAATATTGCAAAACAATGTTTGCATGTAATAAGGGAGGATAGACCTACCATGAAAGAAGTGGCAATGGAATTAGAGGGACTAAGAATATCGGAAAAGAATCGATGGGAAAGTGCCAATGAAACTTCTGATGAGATGCAATATTTGCTCAATAATGAAGACTTGTATCATTATGATGTTGGCATTGGAGGAAGTGGCACGAGTTCTGGGTTAGATAGCTTGAATCAAATGCCTGTGACATTGGGTGGTGGAAGATAA 2214 0.4476 MGFLSKLLFLLLLPVIPVAAQTAPPQPFPNCTTTCGSLEIPYPFGTTVGCYLNPSFLVTCNQTNTSTSAATPPTPFLRRSTIPVLSISLHGEMRITMPSGIAEDCYNSSGAPLTEILGSLNLISFYFSSDRNRLEDIREANDGDGGGCSGSGCCESRIPSELSTVSFGSSAPMNNHTLVHDFNPCGYAFLVEEGGYNFSSEDLKNLTQRTFPVVLDWAVGNQTCEEAEGNLTSYACVAEKSYCYNSTNGPGYRCNCSDGFQGNPYLLHGCTEIDQCMEAKDCTNEAKCQSFLGGHNCSCPEGQEGDGKIQGTGCNPKSNSNSRTIFILIIAMSVSVGVLALLMGSFYVYWGMKKRKLLKLKQNFFLQNGGILLQQRIANQRGSSNSIETAKVFTEEELKKATNNFDEGRVLGQGGYGTVYKGVLPSNNKVVAIKKSKISDPGQIEQFINEVVVLSQINHRNVVKLLGCCLETEIPLLVYEFIPSGTLFMHLHDDQGQSLRLSWKARLRIAAETAGALAYLHSAISTPIIHRDVKTTNILLDSDLTVKVSDFGASRLVPLDQTQLTTLVQGTLGYLDPEYFHTSLLTERSDVYSFGVVLAELLTGVKALSFERPENDRNLAVYFVTSMKEGRLLHIVDKHIVNEVNVEHLTEVANIAKQCLHVIREDRPTMKEVAMELEGLRISEKNRWESANETSDEMQYLLNNEDLYHYDVGIGGSGTSSGLDSLNQMPVTLGGGR 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1487 737 SMART serkin_6 405 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g1487 737 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 15 710 IPR045274 GO:0007166
Aed3g1487 737 Gene3D Phosphorylase Kinase; domain 1 390 481 - -
Aed3g1487 737 ProSitePatterns Serine/Threonine protein kinases active-site signature. 528 540 IPR008271 GO:0004672|GO:0006468
Aed3g1487 737 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 16-RELATED 15 710 - -
Aed3g1487 737 ProSiteProfiles EGF-like domain profile. 272 306 IPR000742 -
Aed3g1487 737 Pfam Protein tyrosine and serine/threonine kinase 408 677 IPR001245 GO:0004672|GO:0006468
Aed3g1487 737 ProSiteProfiles Protein kinase domain profile. 405 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g1487 737 Gene3D Laminin 218 310 - -
Aed3g1487 737 Pfam Wall-associated receptor kinase galacturonan-binding 31 93 IPR025287 GO:0030247
Aed3g1487 737 SUPERFAMILY EGF/Laminin 272 306 - -
Aed3g1487 737 ProSitePatterns Protein kinases ATP-binding region signature. 411 435 IPR017441 GO:0005524
Aed3g1487 737 SUPERFAMILY Protein kinase-like (PK-like) 382 678 IPR011009 -
Aed3g1487 737 Gene3D Transferase(Phosphotransferase) domain 1 482 706 - -
Aed3g1487 737 CDD STKc_IRAK 411 680 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1487 Aed-Chr3 19034306 19040203 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1487 8 729 Receptor kinase-like Gene Family AT1G21230 44.356 0.0 590
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Aed3g1487 PK_Tyr_Ser-Thr 9.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1487 - - gmx:100798027 828.55