Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1468 ATGGGAATTATTCTCTCAGCTGCTAGAAAAAGCTTGAAGCGCAAAGCCGAAGGAGACTTAGCGGATGACGAGCAATCACATCCCAAAGTGCAGCGTCGCCTCTCAAATTTACTACCCGTCCAACAAATTTCACTTCTCAATTCTCCGGATCCCGATGCGGTCAAGACCGCCGTTCTCGGCCTCTTCGAATATACTAAGAAATTCCGGCGGTCTCACTCTATCCCAAAGGACTTGGTAAATACTATAGTGAACAGCGGTGCTGTTGCTTCTCTTGTGAGATATCTTCGTGTGCCACCGGATGATGATGACCGTATTTCTCAATACAAGGTGAAGAAAGGATGCGTCTTTATCCTTGGATTTATTGCCGATAAAGGACCAGAGCATCGCCAACTCATTATAGATGCTGGAGCCTTGTCCTGTCTTGTAGATTTGTTAAAGAGGCACAAGAATAGTACCTTTCCTCCATCACTTCTAAGGATAGTAGCTACTACAATAAACCATCTTGCCTGTGACTGTACCATCATTCAGAACCTTGTCAGGATGGAAGGTGCTATCCCTCCTCTTGTTGAATTGCTTGAATTCAATGTCACAAAAGTACGGGCAGAGCCTAAAGTACAGGCAGCGGCTGGATTGGCCTTGGGAACTCTTGCACATGACAACATTGATATTAGTAATCAGATTGTTGAATGCAATGCTTTACCCACTCTTGTACTAATGCTTCGATCAAAGGATCCTACAATACAACATGCGGCGGTTGATGTGATTGATGTCCTGGTCAATTCTACATCAGCTATTAGGAAAGAAATTCTTCTAGCTGGGGCTTTACAACCCGTCATTTCTTTACTCAGTTCCTGCTGTTTACCTAGCCAAATAGCAGCAACCACCTTACTTGGTAATTTGGCTGCAACAGCTCCAGATTGCAAGATTCATATTTCCCAAAGAGGAGCTATTCCACAATTAATTGGCATGCTTAAGTCTCCAGATGTAGAGCTTCGGAGAATGTCTGTTCGTACACTTAGGAATTTGGCACAGGACCCGCATAATCAAGCCAGTATTGCTCATAATGGAGGGATAGAGCCTCTGCTCAGTCTTCTTGACTCAAACAATGCAAACCTCCAATATGATGCTGCTTTTGCTCTCTTTGATCTTGTTGTTAATGAGGATTTTGCTGTAGATTTTATTAAGGTTGGTGGTTTTCAGAAACTGAAAGATGGACATCTCATAAATAAATGTACTAAAATGCCTGTAACAGGCACATTGAAAATGTTAGGGCATCAGATGAAAGGGCGAGTATTAAAACAACTAATATATCTTATGCGCTCTGAGAAAAAAGAGGTTCAAAGAAGTGTAGCTATTGCTCTTGCTTATTTATGTTCTCCTTTTGATAGAAAAACTGTATTCATTGACAATAATGTATTAGAATTGCTGCTGGATATTCTTCAATCTCCAAACATAAAGCAGAAGGGGGATGCTTCAGCGGTACTTCACAAATTGGCTTCCCAAGTGTATCATTCTGTCTTTCCTTTTGACACTGCTCATCCACCACCAACTCCCCATATGTATTTGGGCGAGGAATATGTAAACAATGCCAAACTTTCTGATGTCACATTCCTGGTTGAAGGTAGAACTTTTTATGCTCATCAAGATTGTTTACTTTCTTCAGATGTATTTCAGGCCATGTTTCATGGCAGTTATAGGGAGAGCAAAGCAAAATATGTAGTGATTCCAAATATTAAATGGGATGTCTTTGAAACGATGATGAGATTTATATACACTGGAACAGTAGATGTCAATTTGGACATTGCTCAGGACCTCCTCAGAGCTGCAGATCAGTTTCTTCTGGACAACCTTAAGCGTATTTGTGAATATGCTATTGCTCTGAATATTTCTGAGGAAAATGTTTTACCAACGTATGAGATGTCGGAGGCTTACCATGCTACTACATTAAAACATAAATGTGTACTATTTGTGCTAAAGAGATTTGATAAACTGAGGTTGAAACCATGGTATTGCCCCCTTGTTCATCGCATGGTACCAGAAATACGGATGTTCTTCTCAACATTACTGAGTGCTGCTGACCCATCCCTATATTTATCCCCCTGGGGCGGGAATGAGCTTTGGATTGGGATTAGTTGTAAAAACTATGATGGGAATCATGGGGATATAATTGAATAA 2175 0.4097 MGIILSAARKSLKRKAEGDLADDEQSHPKVQRRLSNLLPVQQISLLNSPDPDAVKTAVLGLFEYTKKFRRSHSIPKDLVNTIVNSGAVASLVRYLRVPPDDDDRISQYKVKKGCVFILGFIADKGPEHRQLIIDAGALSCLVDLLKRHKNSTFPPSLLRIVATTINHLACDCTIIQNLVRMEGAIPPLVELLEFNVTKVRAEPKVQAAAGLALGTLAHDNIDISNQIVECNALPTLVLMLRSKDPTIQHAAVDVIDVLVNSTSAIRKEILLAGALQPVISLLSSCCLPSQIAATTLLGNLAATAPDCKIHISQRGAIPQLIGMLKSPDVELRRMSVRTLRNLAQDPHNQASIAHNGGIEPLLSLLDSNNANLQYDAAFALFDLVVNEDFAVDFIKVGGFQKLKDGHLINKCTKMPVTGTLKMLGHQMKGRVLKQLIYLMRSEKKEVQRSVAIALAYLCSPFDRKTVFIDNNVLELLLDILQSPNIKQKGDASAVLHKLASQVYHSVFPFDTAHPPPTPHMYLGEEYVNNAKLSDVTFLVEGRTFYAHQDCLLSSDVFQAMFHGSYRESKAKYVVIPNIKWDVFETMMRFIYTGTVDVNLDIAQDLLRAADQFLLDNLKRICEYAIALNISEENVLPTYEMSEAYHATTLKHKCVLFVLKRFDKLRLKPWYCPLVHRMVPEIRMFFSTLLSAADPSLYLSPWGGNELWIGISCKNYDGNHGDIIE 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1468 724 Pfam Armadillo/beta-catenin-like repeat 226 254 IPR000225 GO:0005515
Aed3g1468 724 Pfam Armadillo/beta-catenin-like repeat 305 343 IPR000225 GO:0005515
Aed3g1468 724 ProSiteProfiles BTB domain profile. 533 599 IPR000210 GO:0005515
Aed3g1468 724 SUPERFAMILY ARM repeat 20 404 IPR016024 -
Aed3g1468 724 SUPERFAMILY POZ domain 522 625 IPR011333 -
Aed3g1468 724 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 356 398 IPR000225 GO:0005515
Aed3g1468 724 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 7 692 IPR044282 -
Aed3g1468 724 SMART BTB_4 533 629 IPR000210 GO:0005515
Aed3g1468 724 Gene3D - 288 413 IPR011989 -
Aed3g1468 724 Gene3D - 414 506 IPR011989 -
Aed3g1468 724 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 PROTEIN 7 692 - -
Aed3g1468 724 SMART arm_5 304 344 IPR000225 GO:0005515
Aed3g1468 724 SMART arm_5 75 123 IPR000225 GO:0005515
Aed3g1468 724 SMART arm_5 219 260 IPR000225 GO:0005515
Aed3g1468 724 SMART arm_5 125 170 IPR000225 GO:0005515
Aed3g1468 724 SMART arm_5 459 500 IPR000225 GO:0005515
Aed3g1468 724 SMART arm_5 262 302 IPR000225 GO:0005515
Aed3g1468 724 SMART arm_5 345 385 IPR000225 GO:0005515
Aed3g1468 724 SMART arm_5 172 218 IPR000225 GO:0005515
Aed3g1468 724 Pfam BTB/POZ domain 525 625 IPR000210 GO:0005515
Aed3g1468 724 SUPERFAMILY ARM repeat 428 502 IPR016024 -
Aed3g1468 724 Gene3D - 36 285 IPR011989 -
Aed3g1468 724 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 315 357 IPR000225 GO:0005515
Aed3g1468 724 Gene3D Potassium Channel Kv1.1; Chain A 511 658 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1468 Aed-Chr3 18661806 18667281 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1468 275 500 U-box Gene Family AT2G23140 26.923 1.94e-12 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Aed3g1468 BTB 5.3e-21 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1468 - - gmx:100783124 724.931