Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1441 ATGGCCAATTCTTTGAACTCTGTTGAGGAGGGTATAGCTAACAAGTATCATACTCGTGGTAATCACTGGAGGGTTTCTGAGGATCAAAAGCTAAGCCAACTTGTTCAAGAACATGGCACTGAGGACTGGAATTTAATTGCTGAACATATAGAGGGAAGAACAGATAAAAGCTGCAAAACAAGGTGGATCAAGTATCTTGATCCCAACATTAACAAAACACCCTTCACCAAGGAGGAAGAAGGGAGGCTCGTCATGGCTCATGCGCTTTACGGTCCGAGGTGGGCAACCATAGCCAAGCTCTTCCCCGGTCGAACTGATAAGGGCTTGATGAACCATTGGAATGCTCTAATGACGCAACAAAAGAGGGAATCAAAGAAGAGAACCTGGCATGAGCTTACAGCCTATAATGTCAACTCAAGCGTTGAATCCTTCCCCAAAAATGTTGACATTATGAGTAGGAACTATTACACTGAGCAAAGGCTACTTGCAACGGCATATCCCAGTGGTTCTTTGAACTTCCCTGATGCCCTAAACTTCCCTGTGTTGGATTCATCTGGGAAACCAGGGAGGTGTGATGATCCTTTTGGACTGTTTAATATCCGTGCTGGCGATGGAACGATGAAAATGAGTTTGTTCGATAACTCATTCGTGGAGGTTAGGGATTCTTCTTCTTCTTCTCCCAAAGATAATGAGGTTAGGGCTTCTTCTTCCAACGAGAAAGAGCAAACTGATGATGATGGTGGATGCAATGACGTTCCTTTCTATGATTTTCTTGGTGTCAATGTTGATGACAAGTGA 798 0.4386 MANSLNSVEEGIANKYHTRGNHWRVSEDQKLSQLVQEHGTEDWNLIAEHIEGRTDKSCKTRWIKYLDPNINKTPFTKEEEGRLVMAHALYGPRWATIAKLFPGRTDKGLMNHWNALMTQQKRESKKRTWHELTAYNVNSSVESFPKNVDIMSRNYYTEQRLLATAYPSGSLNFPDALNFPVLDSSGKPGRCDDPFGLFNIRAGDGTMKMSLFDNSFVEVRDSSSSSPKDNEVRASSSNEKEQTDDDGGCNDVPFYDFLGVNVDDK 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1441 265 Gene3D - 73 134 - -
Aed3g1441 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 23 66 IPR017930 -
Aed3g1441 265 MobiDBLite consensus disorder prediction 220 252 - -
Aed3g1441 265 SMART sant 19 68 IPR001005 -
Aed3g1441 265 SMART sant 71 119 IPR001005 -
Aed3g1441 265 PANTHER MYB PROTEIN-RELATED 13 260 - -
Aed3g1441 265 Pfam Myb-like DNA-binding domain 23 83 - -
Aed3g1441 265 ProSiteProfiles Myb-like domain profile. 15 66 IPR001005 -
Aed3g1441 265 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Aed3g1441 265 CDD SANT 23 66 IPR001005 -
Aed3g1441 265 SUPERFAMILY Homeodomain-like 19 113 IPR009057 -
Aed3g1441 265 PANTHER OS08G0435700 PROTEIN 13 260 - -
Aed3g1441 265 Gene3D - 21 71 - -
Aed3g1441 265 CDD SANT 74 117 IPR001005 -
Aed3g1441 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 121 IPR017930 -
Aed3g1441 265 MobiDBLite consensus disorder prediction 233 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1441 Aed-Chr3 18118797 18120349 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1441 9 191 MYB Transcription Factor Family AT5G17800 39.086 9.53e-40 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed3g1441 Myb_DNA-bind_6 1.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1441 K09422 - gmx:102660725 180.259