Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1438 ATGGCCAATTCTTTGAACTTGGTTGAGGAGGGCATAGCCAACAAGTATCGTGCTCGTGGTAATCACTGGAGGGTTTCTGAGGATCAAAAGCTAAGCCAACTTGTTCAAGAACATGGCACCGAGGACTGGAATTTAATTGCTGAACATATGGAGGGAAGAACAGATAAAAGCTGCAAAACAAGGTGGATCAAGTATCTTGATCCCAATGTTAACCAAAAACCCTTCACCAAGGAGGAAGAAGGGAGGCTTGTCATAGCTCATGCGCTTTACGGTCCGAGGTGGGAAACCATAGCCAGGCTCTTCCCTGGTCGAACCGATAAGGGCTTGACGAACCATTGGAATGTTCTAGTGACGCGACAAAAGAGGGAATCGAAGAAGAGAACCTGGCATGAGCTTACAGCCTATAATGTCAACTCAAGTGTTGCATCCTTCCCCGGAAATGTTGACATCATGAAGAGGAACTACTACACTGAACAAAGGCTACTTGCAAAGGCATATCCCAGTGGTTCTTTGAAATTTGGGGCGATACCATCCTTCTCTGATGCCTTAACCTTCCCTGTGTTGGATTCATCTAGGAAACCAGGGTGGCGTGATGATCCTTTTGGACTGTTTGGTGTCCGTGCTGGCGATGGAACGATGAATGCGAGTTTGTTTGATAACTCGTTCACGGAGGTTAGGGCTTCTTCTTCCAATGAGAAAGAGCAAACTGAAGATGATGGTGGATGCAATGAAGTTCCTTTCTATGATTTTCTTGGTGTCAATGTTGACGACAAGTGA 777 0.4582 MANSLNLVEEGIANKYRARGNHWRVSEDQKLSQLVQEHGTEDWNLIAEHMEGRTDKSCKTRWIKYLDPNVNQKPFTKEEEGRLVIAHALYGPRWETIARLFPGRTDKGLTNHWNVLVTRQKRESKKRTWHELTAYNVNSSVASFPGNVDIMKRNYYTEQRLLAKAYPSGSLKFGAIPSFSDALTFPVLDSSRKPGWRDDPFGLFGVRAGDGTMNASLFDNSFTEVRASSSNEKEQTEDDGGCNEVPFYDFLGVNVDDK 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1438 258 ProSiteProfiles Myb-like domain profile. 15 66 IPR001005 -
Aed3g1438 258 Pfam Myb-like DNA-binding domain 23 83 - -
Aed3g1438 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 70 IPR017930 -
Aed3g1438 258 PANTHER OS08G0435700 PROTEIN 14 253 - -
Aed3g1438 258 SUPERFAMILY Homeodomain-like 17 113 IPR009057 -
Aed3g1438 258 Gene3D - 73 134 - -
Aed3g1438 258 PANTHER MYB PROTEIN-RELATED 14 253 - -
Aed3g1438 258 SMART sant 19 68 IPR001005 -
Aed3g1438 258 SMART sant 71 119 IPR001005 -
Aed3g1438 258 CDD SANT 23 66 IPR001005 -
Aed3g1438 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 121 IPR017930 -
Aed3g1438 258 Gene3D - 21 71 - -
Aed3g1438 258 CDD SANT 74 117 IPR001005 -
Aed3g1438 258 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1438 Aed-Chr3 18090200 18091680 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1438 22 255 MYB Transcription Factor Family AT4G33450 34.921 1.16e-39 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed3g1438 Myb_DNA-bind_6 3.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1438 K09422 - gmx:102660725 197.208