Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1435 ATGGCGAATTCTCCTGCATCCGCTGAGACCCAACCGAGACGCCGTCATCGTGTTAGTTTCTGGCAGGTAGAGGAGGATCGAAAGCTTGGCCAACTTGTTCGTGAACATGGTCCCCAGAACTGGAAAACAATTGCTGGGCAACTAGAAGGAAGAACTGGTAAAAGCTGTCGATTAAGGTGGTGCAATCACCTGGACCCTCGACTTAACAAAACCCCATTCACGAGAGAGGAAGAGGAGAGGCTGCTTGCAGCACGAGACGAGTATGGAGCAAGATGGGCCCACATAGCCAATCTCTTCAACGGAAGAACGGACAATGCCCTAAAAAACCATTGGCATGTCATGATGGCGAGGCGGAGAAAGAATCCAAACAATTGGCTGAACTCGGCGACGGTGCCTTCTGAACATAGGGCACATGTATTCATGTACCCTAATGGTTCGCTGAGCTCTGTGAAGTTTGGTATCATACCGTCCTTCGCAGAGACTTTCCCCGTGATGGCTTCTCTGGGTAGAGAAGCCACTCGAGGGAGTACTTTTGGACTATACAATGCCGCTGGTGATGGAGGAACATTGCGAGGGAGTGTCTCTTCTTCTTCCTCAGTGCAAGTGCAAGCTGGTGAGGAAGAAGTTCCGTTCTATGATTTTCTCGGTGTTGGTGACCAGTGA 663 0.5038 MANSPASAETQPRRRHRVSFWQVEEDRKLGQLVREHGPQNWKTIAGQLEGRTGKSCRLRWCNHLDPRLNKTPFTREEEERLLAARDEYGARWAHIANLFNGRTDNALKNHWHVMMARRRKNPNNWLNSATVPSEHRAHVFMYPNGSLSSVKFGIIPSFAETFPVMASLGREATRGSTFGLYNAAGDGGTLRGSVSSSSSVQVQAGEEEVPFYDFLGVGDQ 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1435 220 CDD SANT 21 64 IPR001005 -
Aed3g1435 220 CDD SANT 72 115 IPR001005 -
Aed3g1435 220 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Aed3g1435 220 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 68 IPR017930 -
Aed3g1435 220 SUPERFAMILY Homeodomain-like 16 111 IPR009057 -
Aed3g1435 220 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 119 IPR017930 -
Aed3g1435 220 Pfam Myb-like DNA-binding domain 21 81 - -
Aed3g1435 220 PANTHER MYB PROTEIN-RELATED 12 128 - -
Aed3g1435 220 ProSiteProfiles Myb-like domain profile. 13 64 IPR001005 -
Aed3g1435 220 SMART sant 17 66 IPR001005 -
Aed3g1435 220 SMART sant 69 117 IPR001005 -
Aed3g1435 220 PANTHER OS08G0435700 PROTEIN 12 128 - -
Aed3g1435 220 Gene3D - 19 69 - -
Aed3g1435 220 Gene3D - 71 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1435 Aed-Chr3 18062074 18064119 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1435 21 120 MYB Transcription Factor Family AT3G29020 65.000 2.51e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed3g1435 Myb_DNA-bind_6 4.3e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1435 K09422 - gmx:102660725 222.246