Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1427 ATGCCGTCTCAGTGGACAAGATCTCAAATAGTTGCACAAGAAGATCATAGCTATAAGCTGCAACAACAAAAGTGCTGCAGGAACATTGAAAGTGAAAAAAGCACCAATGCATCAAAAACAGGGATTATTAATGCATCTAATAAGAGAAAGCAGCAAAACATAGAGAAAGCAAAAAGCTTTGAAGAAACTGTCCTATTTGCAGCATCAAGTTCAATCTCTACTTCAGCTTCTTTGGCTGTAGATTCCAGTGGAGATCATCATAGAGATTTTGGTTCTTTCGTAGAATATGAATGTGACTCTGGCTTGGCAATTCAACATCAATTAGGATTATCACAGCATCCACAACATTTGGAAACTAGTACTCAGCTCCAAATTACTACCATAAAAGATGAAAATTGGAGGCATTTATGTCACCCTTTGCCTCTTCCACCTTATAATGGGTTATCATCACAGCATCTTCAATCAAATTGGATCAAGGGAAAGCTTCTTGGAAGAGGCTCATTTGGCCATGTCTATGCTGGATTCAATAGGACAAATGGACAGCTATGTGCAATTAAGGAAATGAGATCCATTTGTGAGGATCAGAACTCTGAAGTTTATCTCAAAGAGATAAATCAGGAGGTAGCAATACTGAGTCAGCTTTCCCATTGCAACATTGTCCAATACTATGGAAGTGAACTGGAGAAAGGAAAGATGTCCCTATATTTAGAGTATGTCTCCGGTGGATCAATTCACAAATTGCTTCAGGAATATGGCCCTTTCAAGGAATCTCTTATTAAAAGTTACACCAAGCAGATTCTTCATGCTCTAGCTTACTTGCATGCAAGAAATACTGTGCACAGGGATATCAAGGGCTCAAACATACTAGTAGATCCTAATGGTATAATCAAGGTTGCTGATTTTGGCATGGCAAAACATGTAACATCAAGTACTATGGTTCATTCTTTCCAAGGAACCCCTCATTGGATGGCACCTGAGGTTGCTGCAATGTTCAAAATTGCAAACAGCAATGATTACCCGCAAATTCCTTCTCATCTTTCAGAGGATGCACAGTTTTTTTTGAAACTTTGCTTACAAAGAAACCCTCTTTTACGTCCTTCGTCTGCCCAACTTCTACAACACACTTTTATTCAAGAACATGGATGA 1146 0.3883 MPSQWTRSQIVAQEDHSYKLQQQKCCRNIESEKSTNASKTGIINASNKRKQQNIEKAKSFEETVLFAASSSISTSASLAVDSSGDHHRDFGSFVEYECDSGLAIQHQLGLSQHPQHLETSTQLQITTIKDENWRHLCHPLPLPPYNGLSSQHLQSNWIKGKLLGRGSFGHVYAGFNRTNGQLCAIKEMRSICEDQNSEVYLKEINQEVAILSQLSHCNIVQYYGSELEKGKMSLYLEYVSGGSIHKLLQEYGPFKESLIKSYTKQILHALAYLHARNTVHRDIKGSNILVDPNGIIKVADFGMAKHVTSSTMVHSFQGTPHWMAPEVAAMFKIANSNDYPQIPSHLSEDAQFFLKLCLQRNPLLRPSSAQLLQHTFIQEHG 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1427 381 Gene3D Transferase(Phosphotransferase) domain 1 154 381 - -
Aed3g1427 381 SUPERFAMILY Protein kinase-like (PK-like) 138 379 IPR011009 -
Aed3g1427 381 SMART serkin_6 157 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g1427 381 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 327 379 - -
Aed3g1427 381 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 54 327 - -
Aed3g1427 381 ProSitePatterns Protein kinases ATP-binding region signature. 163 186 IPR017441 GO:0005524
Aed3g1427 381 ProSiteProfiles Protein kinase domain profile. 157 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g1427 381 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA-LIKE ISOFORM X1 327 379 - -
Aed3g1427 381 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA-LIKE ISOFORM X1 54 327 - -
Aed3g1427 381 Pfam Protein kinase domain 159 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1427 Aed-Chr3 17995138 17999607 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1427 155 378 MAP Kinase Kinase Kinase AT1G53570 55.769 1.07e-100 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Aed3g1427 Pkinase 2.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1427 K04421 - rcu:8270414 343.584