Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1407 ATGAGAGTGAAGCCATGCTGTGAGAAGGTAGGGTTGAAGAAAGGACCATGGAATGAGGAAGAAGACAAAAAGCTAGTGGCTTTTGTTGAAAGCCATGGCCCTAGAAACTGGCATTCAGTGCCTGCCAAAGCTGGTCTTCAAAGATGTGGAAAGAGTTGCAGAATGAGGTGGATCAACTACCTAAACCCTAATATCAAGCGAGGAAGCTTCACCTTCGAGGAACATTGCACTATTATTCAACTCCATGCTCTTCTTGGAAACAAATGGTCAATCATTGCCGCTCACATGCCAAAGAGAACTGACAATGACATCAAGAACTACTGGAACACCAACATCAAAAAAAGACTCCTCATGAAAAATGGCTTATTAGATCCCATTACCCAGAAATCAATAAAACCCAACACGTTTCAAGCCATCAACATAAGCCACGTGGCTCAATGGGAGAGTGCTCGAATCGAATCTGAAGCTAGAGAATCTATGTTCCAATATGGATCTCTCCCCTCACATCTCCCTCAACCAATCCTAAGCAAAATCCCAACTCAAGCTTTTCATTCATCAGAAATAAATAGTGGTCAAACGCAAAGGATGGTGGAAGATGGTAATTTTGTCTCAAACTTTGAAGATGATGACGACGTTATGATAGCTGTAGAAGCATTTAGAACAGAAAGTAATAGAAGTATGCGTGTCTTGTGTGGTTTTGTAACTCTTGTTTACCTTCAGGTTCAGGTTGTCTTGGACTATATGAAAGCTTTCGAAAACAAAACTTGTACTGCAGTTTTCTCGATTGTGGCTGTGATTTCATCACAGTCCTTAACAATGCAGGAAAATGCAACTAATGCGATGATATAG 849 0.4099 MRVKPCCEKVGLKKGPWNEEEDKKLVAFVESHGPRNWHSVPAKAGLQRCGKSCRMRWINYLNPNIKRGSFTFEEHCTIIQLHALLGNKWSIIAAHMPKRTDNDIKNYWNTNIKKRLLMKNGLLDPITQKSIKPNTFQAINISHVAQWESARIESEARESMFQYGSLPSHLPQPILSKIPTQAFHSSEINSGQTQRMVEDGNFVSNFEDDDDVMIAVEAFRTESNRSMRVLCGFVTLVYLQVQVVLDYMKAFENKTCTAVFSIVAVISSQSLTMQENATNAMI 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1407 282 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aed3g1407 282 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Aed3g1407 282 CDD SANT 69 112 IPR001005 -
Aed3g1407 282 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aed3g1407 282 CDD SANT 16 61 IPR001005 -
Aed3g1407 282 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Aed3g1407 282 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Aed3g1407 282 Gene3D - 68 132 - -
Aed3g1407 282 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 206 - -
Aed3g1407 282 SMART sant 13 63 IPR001005 -
Aed3g1407 282 SMART sant 66 114 IPR001005 -
Aed3g1407 282 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Aed3g1407 282 PANTHER TRANSCRIPTION FACTOR MYB106 1 206 - -
Aed3g1407 282 Gene3D - 13 66 - -
Aed3g1407 282 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1407 Aed-Chr3 17678487 17680062 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1407 1 157 MYB Transcription Factor Family AT3G01140 62.195 2.63e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed3g1407 Myb_DNA-binding 1.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1407 K09422 - gmx:100817205 291.582