Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1399 ATGTCTGTCTTACCTTCTTCCTCACGCTGCTTGGTTGCCTTTGTTGCAATCATTACTGTGCTGCAAACTTGCACTGCCAAGCATCATCACCGATTCTGTCCTCCGTCCTCATGCGGCAAAATTCGCAACATAACATATCCGTTTCGACTCAAAGGCGATCCACGCCATTGCGGCGACAAAAGGTTCGAATTAAACTGTGTGAACAACGTGACAACAGTGTTGTCTCTGTTTCCAGGAAAACACTACTATGTGCAGGAAATCGATTACAAGAGATACCAGATCCGATTGACTGATGCTGTGAAGGACGTCAAGGATGGCTGCCGTTTAAAGGTTGGAACCCTTGCCTCCTCTACGCAGGAGTGGTGGACATGTGACAGAAAAAGAAACAGAAACTTTTGGTATGGTGATATCCACAAGTTGCTGGAAGACGGATTTTGGTTGTCTTGGTTACCATTCATTTGTAGGCATCACTGTCCAAACGACGAAAGGTTTAGTTATATCCCTTGCTCCATCAATGAAACCACACAACAAATTCAATGTGAAGAAACGGGAAACTGCCAAATCTTGGGAAAGAATTCCAACTATTGCGGAATAACTGCACGAATTGTTGGAGATACATTACGTTATTTTGAAAATATTCTAAAAGGATTTGTTCAAAGAATAAGAGATGTCAAGCTACCAATATTATCACTAAAAAACTATGAGGGATATGGAGATGATATCATAGGACAAGATGTTCTACCAATACTTATAGTAGCTAGATATATGTTTGGAGTTGCACTTTTGTTTGTGATATTTATTTATATGTGGCGACGAAGACATTTTTCAATGTATGGAAACATTGAAACCTATTTGCTAGATAACAATCTAAATCCAATTAGGTACGAATACAAAGAAATCAAGAAAATGGTCAAAGGTTTTAAAGTGAAATTGGGTCAAGGAGGTTACGGGTCTGTATACAAAGGAAAGCTTCGGAGCGGGCCAGAAGTAGCAATAAAGATGTTGAGCAAATCCAAAGGTAATGGACAAGATTTTGTAAATGAGGTGACTACCATCGGAAGAATACATCATATGAATGTAGTCAATCTTATTGGATATTGTGTTGAAGGAAAAAAGCGTGCTCTAGTTTATGAATACATGTCTAATGGGTCATTGGATAAATATATTTTCTCTAAAGAAGGAAATGTCCCTTTAAGTTATGAGGAAACATATGAAATATCTCTTGGAATAGCTCGTGGGATTGCATATTTACATCAAGGTTGTGATGTACAAATTTTACATTTTGATATCAAGCCTCATAATATTCTTTTAGATGATAGTTTTACTCCAAAGATTTCAGATTTTGGACTTGCAAAGCTATATCCCGTTAAAGATGGGTCTGTTGTTTTAACTGCAGCAAGAGGAACACTGGGTTACATGGCTCCAGAATTATTCTACAAAAATATAGGTGGAGTTTCTTATAAGGCAGACGTTTATAGCTTTGGAATGCTTTTGATGGAAATGGGAAGTAGGCGGAGGAACGCAGATCCTCATGCAGAGCATTCAAGCCAACATTACTTTCCATTTTGGATCTATGACCAATTTAAAGAAGAAAGAGATATTGATATGGAAGATGCCTCAGAAGAGGATAAGATTTTAGTGAAAAAGATGTTCATAGTTGCACTTTGGTGTATACAATTGAAACCAAATGACCGTCCTTCAATGAAGAAAGTTGTAGGAATGCTTGAAGGAAAGGTTGAAAGTCTTCAAATGCCACCAAAGCCTTCTTTTTGTCCCCATGAAACAATTGAACATGATGGCGAAATCAACTCTGACCAAACATTATGGACTGATTCAATTAGTTTAAACCAAAATCTTGGCAAAACCGAGTCCAATCATTCACAAGAGAATGACATTTGA 1899 0.3781 MSVLPSSSRCLVAFVAIITVLQTCTAKHHHRFCPPSSCGKIRNITYPFRLKGDPRHCGDKRFELNCVNNVTTVLSLFPGKHYYVQEIDYKRYQIRLTDAVKDVKDGCRLKVGTLASSTQEWWTCDRKRNRNFWYGDIHKLLEDGFWLSWLPFICRHHCPNDERFSYIPCSINETTQQIQCEETGNCQILGKNSNYCGITARIVGDTLRYFENILKGFVQRIRDVKLPILSLKNYEGYGDDIIGQDVLPILIVARYMFGVALLFVIFIYMWRRRHFSMYGNIETYLLDNNLNPIRYEYKEIKKMVKGFKVKLGQGGYGSVYKGKLRSGPEVAIKMLSKSKGNGQDFVNEVTTIGRIHHMNVVNLIGYCVEGKKRALVYEYMSNGSLDKYIFSKEGNVPLSYEETYEISLGIARGIAYLHQGCDVQILHFDIKPHNILLDDSFTPKISDFGLAKLYPVKDGSVVLTAARGTLGYMAPELFYKNIGGVSYKADVYSFGMLLMEMGSRRRNADPHAEHSSQHYFPFWIYDQFKEERDIDMEDASEEDKILVKKMFIVALWCIQLKPNDRPSMKKVVGMLEGKVESLQMPPKPSFCPHETIEHDGEINSDQTLWTDSISLNQNLGKTESNHSQENDI 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1399 632 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 10 99 - -
Aed3g1399 632 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 100 607 - -
Aed3g1399 632 Pfam Wall-associated receptor kinase galacturonan-binding 33 98 IPR025287 GO:0030247
Aed3g1399 632 Gene3D Phosphorylase Kinase; domain 1 285 379 - -
Aed3g1399 632 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
Aed3g1399 632 Gene3D Transferase(Phosphotransferase) domain 1 380 585 - -
Aed3g1399 632 CDD STKc_IRAK 311 577 - -
Aed3g1399 632 ProSitePatterns Protein kinases ATP-binding region signature. 311 333 IPR017441 GO:0005524
Aed3g1399 632 ProSiteProfiles Protein kinase domain profile. 305 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g1399 632 SUPERFAMILY Protein kinase-like (PK-like) 292 576 IPR011009 -
Aed3g1399 632 Pfam Protein kinase domain 309 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g1399 632 SMART serkin_6 305 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g1399 632 PANTHER RUST RESISTANCE KINASE LR10-RELATED 100 607 IPR045874 GO:0004672
Aed3g1399 632 PANTHER RUST RESISTANCE KINASE LR10-RELATED 10 99 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1399 Aed-Chr3 17506879 17513519 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1399 259 626 Receptor kinase-like Gene Family AT4G18250 43.832 1.87e-100 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Aed3g1399 Pkinase 3.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1399 - - var:108336466 695.656