Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1389 ATGGCCAAGATGTTTGGTCTCTTGTTCATGATTGGAGCAATGTTTTTTGGTGTTGGAGCTGAGCCAGTTGAAGATAAACAAGCACTGCTTGATTTCCTTCACAACATAAACCACTCTCATCATTATCTCAACTGGAACAAGAGCACTTCTGTGTGCAAAAGGTGGATAGGAGTAACCTGCAACAAAGACCAATCACAAATTATATCTCTTCAACTCACCAAAACTGGATTGAGTGGTCCAATCCCACACAACACTCTTAGCCTTCTCTCATCACTCCAAACTCTGAGTCTTGCATCAAACACCATAACTGGCTCTTTCCCTTCTTCTTTCTCTCAGCTAAAGAATCTGACCTATCTCTATCTCCAATCCAACAACTTTTCTGGTCCATTGCCATCAGATTTCTCAGTTTGGAAGAATCTTAGTATTGTAAACTTATCCAACAACTCTTTCAATGGTAGCATACCATTTTCACTCTCAAATTTGACTCATCTCACTTCTTTAGTCCTAGCCAACAACACCCTTTCAGGTGAAATTCCTGATCTCAATATCTCTACCTTGAAAGAGGTGAACTTTGCCAACAATAACCTTAGTGGAGTTGTGCCTAAATCCCTTGAGAGATTCTTTCCAAGTGGTGCATTTTCTGGTAACAACAATCTTATTTCTTCACATGCACTACTTCAAGGACCAAATCCTCATCCAACAAGGAAAAAAAAATCCAAAGGACTTAGGGAGCCAGCATTGTTGGGAATCATCATTGGTGGTTGTGTGCTAGGACTAGCAATTGTAGCAGCTTTTATGATTGTGTGTTGCTATGAAAAAAGTGGACAACAACAAGTCATGAAGTCTCATAAAAGAGAAGTACCTAGGAAGAAAGAAGAAGGTTCCGAAAGCCGAGAACACAAGTACAAAATTGTTTTCTTTGAGGGCTGCAATCTTGCATTTGACTTGGAGGACTTGCTGAGAGCATCTGCTGAGGTGCTTGGAAAGGGCACGTTTGGGACAGTGTACAAGGCTGCTCTGGAGGACACGACGACGGTGGCAGTGAAGCGGCTGAAGGATGTCACAGTCGGGAAACGCGAATTTGAACAGCAGATGGAGATGGTGGGGAGGATTAGGCATGACAATGTGGCTCCACTGAGGGCGTATTACTATTCAAAGGAGGAGAAACTCATGGTTTATGATTACTACGAACAGGGCAGTGTCTCTACAATGTTGCATGTTACACCAAACTCATGA 1236 0.4231 MAKMFGLLFMIGAMFFGVGAEPVEDKQALLDFLHNINHSHHYLNWNKSTSVCKRWIGVTCNKDQSQIISLQLTKTGLSGPIPHNTLSLLSSLQTLSLASNTITGSFPSSFSQLKNLTYLYLQSNNFSGPLPSDFSVWKNLSIVNLSNNSFNGSIPFSLSNLTHLTSLVLANNTLSGEIPDLNISTLKEVNFANNNLSGVVPKSLERFFPSGAFSGNNNLISSHALLQGPNPHPTRKKKSKGLREPALLGIIIGGCVLGLAIVAAFMIVCCYEKSGQQQVMKSHKREVPRKKEEGSESREHKYKIVFFEGCNLAFDLEDLLRASAEVLGKGTFGTVYKAALEDTTTVAVKRLKDVTVGKREFEQQMEMVGRIRHDNVAPLRAYYYSKEEKLMVYDYYEQGSVSTMLHVTPNS 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1389 411 Gene3D Ribonuclease Inhibitor 22 236 IPR032675 -
Aed3g1389 411 SUPERFAMILY Protein kinase-like (PK-like) 325 409 IPR011009 -
Aed3g1389 411 PANTHER OS05G0588300 PROTEIN 5 406 - -
Aed3g1389 411 Pfam Protein tyrosine and serine/threonine kinase 325 407 IPR001245 GO:0004672|GO:0006468
Aed3g1389 411 Gene3D Phosphorylase Kinase; domain 1 287 395 - -
Aed3g1389 411 ProSitePatterns Protein kinases ATP-binding region signature. 327 358 IPR017441 GO:0005524
Aed3g1389 411 Pfam Leucine rich repeat 81 126 IPR001611 GO:0005515
Aed3g1389 411 ProSiteProfiles Protein kinase domain profile. 321 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g1389 411 PANTHER LRR RECEPTOR-LIKE KINASE 5 406 - -
Aed3g1389 411 SUPERFAMILY L domain-like 26 207 - -
Aed3g1389 411 Pfam Leucine rich repeat N-terminal domain 24 61 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1389 Aed-Chr3 17174449 17176132 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1389 14 406 Receptor kinase-like Gene Family AT4G23740 51.225 8.34e-130 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Aed3g1389 PK_Tyr_Ser-Thr 3.6e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1389 - - gmx:100810095 652.514