Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1378 ATGGATGAGAGCTTATGTGATATTTTCCAAGATAACACACACTTTGGTGGAGGGGATCTCTTTTCCATTTTGGAGAGCCTAGAAGACTTGAAAGATTTTCCTCCAACCAGCAATGAAGCTGTTTTTAATGAACCAACTTCAAAAGAAAATGAGAAAAACTCAAGAAAGGTCTCAATATCTTCAAGTGCACCACAAGATTCTGAAACTGAGACTGAAATATTATCACCCCAAAGCAAGAGACAAAAACTTAGCCCCACATCGGAGGAACCACAGAAGAGTACTTCTCACATAGCCGTGGAGCGCAACCGAAGAAAGCAAATGAATGAGAACTTAACCATCTTGAGGTCGCTTATGCCTTCCTTTTATGTCAAACGGGGAGACCAAGCATCAATAATTGGAGGTGTGGTTGATTACATCAACGAGTTGCAACAGCTTCTACAATGCCTAGAGGCCAAGAAACAAAGAAAAGTGTGCACTACTGAAGTCCTAAGCCCTAGACTAATAGTTTCAAGCCCAAGGCCCTCACCACTAAGCCCTAGAAAACCACCCTTGAGCCCTAGAATTATAAACCTCCCCATTAGTCCAAGAACTCCACAACCAAGTAGCCCTTACAAGCCCTGCAGGTTGCAGCCAACCATAGCCAACTCTCCTACTACTTCTTCTGCTTCTTCTTCCATCAATGATAATAATAATATTAATTATAATGAACTTGTTGCCAATTCCAAGTCCGTTATAGCTGATGTTGAGGTCAAGTTTTCGGGTCCACATGTTCTTTTGAAGACTGTGTCACCACCAATTCCAGGCCAGGCCCTCAGAATAATATCAGCTCTTCGAGACCTACCACTCGAGATCCTCCAAGTCAACATTACCACTGCTGAAGAAACCATGCTAAACTCATTCACTATTAAGATTGGAATTGAATGCCAACTCAGTGCCGAAGAACTCGCTCAACAAATCCAGCAAACATTCTGCTAA 975 0.4236 MDESLCDIFQDNTHFGGGDLFSILESLEDLKDFPPTSNEAVFNEPTSKENEKNSRKVSISSSAPQDSETETEILSPQSKRQKLSPTSEEPQKSTSHIAVERNRRKQMNENLTILRSLMPSFYVKRGDQASIIGGVVDYINELQQLLQCLEAKKQRKVCTTEVLSPRLIVSSPRPSPLSPRKPPLSPRIINLPISPRTPQPSSPYKPCRLQPTIANSPTTSSASSSINDNNNINYNELVANSKSVIADVEVKFSGPHVLLKTVSPPIPGQALRIISALRDLPLEILQVNITTAEETMLNSFTIKIGIECQLSAEELAQQIQQTFC 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1378 324 MobiDBLite consensus disorder prediction 56 93 - -
Aed3g1378 324 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 91 142 IPR011598 GO:0046983
Aed3g1378 324 MobiDBLite consensus disorder prediction 33 104 - -
Aed3g1378 324 MobiDBLite consensus disorder prediction 175 189 - -
Aed3g1378 324 Gene3D - 79 156 IPR036638 GO:0046983
Aed3g1378 324 PANTHER TRANSCRIPTION FACTOR SPEECHLESS 1 324 - -
Aed3g1378 324 PANTHER TRANSCRIPTION FACTOR FAMA 1 324 IPR044283 GO:0003700|GO:0010052
Aed3g1378 324 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 90 168 IPR036638 GO:0046983
Aed3g1378 324 Pfam Helix-loop-helix DNA-binding domain 93 143 IPR011598 GO:0046983
Aed3g1378 324 MobiDBLite consensus disorder prediction 171 204 - -
Aed3g1378 324 SMART finulus 97 148 IPR011598 GO:0046983
Aed3g1378 324 Coils Coil 139 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1378 Aed-Chr3 16701432 16704401 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1378 1 304 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 46.927 2.91e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed3g1378 HLH 1.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1378 K20558 - gmx:100809717 429.869