Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1374 ATGAATGTTTTACCTTCTTTCTCCCCCTATGCGCAATCCATGGTTGCGATTCACATCGTGGTTATCATTTCCGTGCTATTCCAACACCTTACTTGCTCTGCTGAGCAGAGCCCACCCTGTCCTCCTTCTTCGTGCGGTGAAATTCGCAACATATCATATCCATTCCGGCTGAAAGGCGATCCTCCAGGTTGCGGCCTCGCAAGGTACGAGTTAGATTGCGTGAACAAAGCAACCGTGTTAACTCTGTTTTCAGGAAAATACTATGTGCAGGACATCAATTACAAGAATTACACTATTAGATTGGTTGATGCGGGCGTTGTGGAGGACACTGCTTGCTCCATTCCTCGCTATTTCTTAAATTATGGGAATTTTAGTTATGATAGTGATCCAATTCCGGACTTCGACTACGTAAGTCGTCATGTGAGCATAGGTTTCTTAGGGTGTAGTGATCCAGTGACTGATGATCCTCGATACATCGAAGTCAACGGCAACGCCGGTTGTGATTCCCGAGGCCATATCTACGCCTTTCTGACCGACAATCAAGGTCTGACACAAACTGTGGCGGGACTTTCAATAATTGACATCAAGGTTGGGTGCCGTTTAGAGGTTGCAACTTGGACAAGTCACACGAACTGGACGACGGACGCGAACAACGTTGTTTCTTATGTTGATATCGTTAGGTCGCTGGAGGAGGGATTTTTGTTGTCTTGGATACAAGTTATTTGTTGGAATAAATGCAGAATCCATTTCGGTTGCTACATCGATGAAAGCACACGACAAGTTGAATGTGAATCCATAAAGCACTGCCATATCTTCGACTATGACTCCGGAAACTGCGGAATTTCATTTATAATTGGTCAATATATACGACGAATTCCGTCACAGATTCCTGGATATCTACGAGGTCGTCTTAGAGGCATTATAATTGGATTCGTCAATACAATAAGATTTCGCAAACATGTAACACGTTGGCCAAATGATGAAGGAATATTATTTGGACAAAATATTCTACCTATAATTGTAGCAATCAGAATTCTACTTGGGGTCACTATTTTGCTTGTCCTATTTATATATAAGTGGCGACGAAGACATTATTCAATCTATGAAAACATTGAAGTGTTTTTGGGAGATAACAATCTAAATCCCATTAGGTATGAATATAAAGAAATAAAAAAAATGACTAGAGGTTTCAAGGTGAAATTGGGTCAAGGAGGCTTTGGCACTGTATACAAAGGGAATCTTCGAAGCGGGCCAGATGTTGCAATAAAGATGTTAAGCAAATCTGATGCTAATGGACAAGATTTTATTAGTGAAGTGGCTACCATTGGAAGAATACATCATGTGAATGTGGTACGTCTTATTGGATATTGTGTTGAAAGAGAAAAGCGTGCTTTAGTTTATGAATACATGCCTAATGGTTCATTGGATAAATATATTTTCTCTAAAGAAGGGAGTGTTTCTTTAAGTTATGAGAAAACATATGAAATATCTCTTGGCATAGCTCGTGGAATTGCTTATCTGCATCATGGTTGTGATGTTCAAATTTTACATTTTGATATCAAGCCTCATAATATTCTTCTAGATGATAGTTTCAATCCAAAGGTTTCAGATTTTGGACTTGCAAAGCTCTATCCCGTTAAAGATAGGTCTATTGTTTTAACCGAAGTAAGAGGAACTTTGGGTTACATGGCCCCAGAATTATTCTACAAAAATATTGGTGGAATATCATATAAGGCAGATGTCTATAGCTTTGGAATGCTTTTGATGGAAATGACAAGTAGGAGGAGAAACTCAAATCCTCATGCAGAGCATTCAAGCCAACATTACTTCCCCTTTTGGATCTATGATCAATTTAAGGAAGAAAAAGATATTGACATGGAAGATGCCTTAGAAGAGGATAAGATTCTAGTGAAAAAGATATTCCTAATTGCACTTTGGTGTATACAATTGAAACCAAATGAGCGTCCATCAATGAAGAAGGTTGTAGAGATGCTTGAAGGAAAAGTTGAAAGTCTTAAAATGCCTCCAAAGCCTATTTTCTATCCCCATGAAATAATTGGAAATGATAGTAGAATCACCTTCGACCAAACAACATGGAGTGATTCAACTAGTTCTAACAATAGTATTGTCAAAACCAAATCCAGTCATTCCCTAGAGGACAATGCTTGA 2169 0.3891 MNVLPSFSPYAQSMVAIHIVVIISVLFQHLTCSAEQSPPCPPSSCGEIRNISYPFRLKGDPPGCGLARYELDCVNKATVLTLFSGKYYVQDINYKNYTIRLVDAGVVEDTACSIPRYFLNYGNFSYDSDPIPDFDYVSRHVSIGFLGCSDPVTDDPRYIEVNGNAGCDSRGHIYAFLTDNQGLTQTVAGLSIIDIKVGCRLEVATWTSHTNWTTDANNVVSYVDIVRSLEEGFLLSWIQVICWNKCRIHFGCYIDESTRQVECESIKHCHIFDYDSGNCGISFIIGQYIRRIPSQIPGYLRGRLRGIIIGFVNTIRFRKHVTRWPNDEGILFGQNILPIIVAIRILLGVTILLVLFIYKWRRRHYSIYENIEVFLGDNNLNPIRYEYKEIKKMTRGFKVKLGQGGFGTVYKGNLRSGPDVAIKMLSKSDANGQDFISEVATIGRIHHVNVVRLIGYCVEREKRALVYEYMPNGSLDKYIFSKEGSVSLSYEKTYEISLGIARGIAYLHHGCDVQILHFDIKPHNILLDDSFNPKVSDFGLAKLYPVKDRSIVLTEVRGTLGYMAPELFYKNIGGISYKADVYSFGMLLMEMTSRRRNSNPHAEHSSQHYFPFWIYDQFKEEKDIDMEDALEEDKILVKKIFLIALWCIQLKPNERPSMKKVVEMLEGKVESLKMPPKPIFYPHEIIGNDSRITFDQTTWSDSTSSNNSIVKTKSSHSLEDNA 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1374 722 Pfam Wall-associated receptor kinase galacturonan-binding 40 103 IPR025287 GO:0030247
Aed3g1374 722 CDD STKc_IRAK 401 667 - -
Aed3g1374 722 MobiDBLite consensus disorder prediction 699 722 - -
Aed3g1374 722 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 15 691 - -
Aed3g1374 722 SMART serkin_6 395 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g1374 722 Pfam Protein kinase domain 399 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g1374 722 ProSitePatterns Serine/Threonine protein kinases active-site signature. 515 527 IPR008271 GO:0004672|GO:0006468
Aed3g1374 722 Gene3D Phosphorylase Kinase; domain 1 376 469 - -
Aed3g1374 722 PANTHER RUST RESISTANCE KINASE LR10-RELATED 15 691 IPR045874 GO:0004672
Aed3g1374 722 ProSitePatterns Protein kinases ATP-binding region signature. 401 423 IPR017441 GO:0005524
Aed3g1374 722 Gene3D Transferase(Phosphotransferase) domain 1 470 675 - -
Aed3g1374 722 MobiDBLite consensus disorder prediction 699 716 - -
Aed3g1374 722 SUPERFAMILY Protein kinase-like (PK-like) 382 666 IPR011009 -
Aed3g1374 722 ProSiteProfiles Protein kinase domain profile. 395 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1374 Aed-Chr3 16549130 16561062 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1374 6 701 Receptor kinase-like Gene Family AT5G38260 32.163 4.37e-103 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Aed3g1374 Pkinase 3.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1374 - - gmx:100170745 902.508