Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1359 ATGCGAATCAATCCTACTACTTCTGGTCCTGAGATTTCTGCGCTTGAAAAAAAAAATCAGGGACGTATCGCCCAAATAATTGGTCCGGTACTAGATGTAGCTTTTCCCCCAGGGAAGATGCCTAATATTTACAACGCTCTGGTAGTTAAGGGTCGAGATACTGTTGGTCAACAAATTAACGTGACTTGTGAAGTACAGCAATTATTAGGAAATAATCGAGTTAGAGCTGTAGCTATGAGTGCGACAGAAGGTCTAACGAGGGGAATGGAAGTGATTGACACAGGAGCTCCCCTAAGTGTTCCAGTAGGTGGAACAACTCTAGGACGAATTTTCAACGTGCTTGGAGAGCCCATTGATAATTTAGGTCCTGTAGATACTCGCACAACATCTCCCATTCATAGATCCGCGCCTGCCTTTATACAATTAGATACTAAATTATCCATTTTTGAAACAGGAATAAAAGTAGTAGATCTTTTAGCTCCTTATCGTCGTGGAGGAAAAATAGGACTTTTCGGTGGAGCTGGAGTGGGTAAAACAGTACTGATTATGGAATTGATCAATAACATTGCCAAAGCTCATGGAGGTGTATCTGTATTTGGCGGAGTAGGTGAACGTACTCGTGAGGGAAATGATCTTTATATGGAAATGAAAGAATCTGGAGTAATTAATGAACAAAATATTGCAGAATCTAAAGTAGCTCTAGTATATGGTCAAATGAATGAACCGCCCGGAGCTCGTATGAGAGTTGGTTTAACTGCCCTGACTATGGCGGAATATTTTCGAGATGTCAATGAACAAGATGTACTTCTATTTATCGACAATATCTTCCGATTCGTCCAAGCAGGATCTGAAGTATCTGCCTTATTGGGTCGAATGCCCTCTGCTGTGGGTTATCAACCCACTCTTAGTACTGAAATGGGTTCTTTACAAGAAAGAATCACTTCTACCAAAGAGGGGTCCATAACTTCTATTCAAGCAGTTTATGTACCCGCAGACGATTTAACCGATCCTGCCCCTGCTACGACATTTGCACATTTAGATGCTACTACTGTACTATCAAGAGGATTAGCGGCCAAAGGGATCTATCCAGCAGTAGATCCTTTAGATTCAACCTCAACTATGCTCCAACCTCGGATCGTTGGTGAAGAACATTATGAGACTGCGCAAAGAGTTAAACAAACTTTACAACGTTACAAAGAACTTCAAGACATTATAGCTATCCTTGGCTTGGATGAATTATCCGAAGAAGATCGCTTAACCGTAGCAAGAGCACGAAAAATTGAGCGTTTCTTATCACAACCTTTTTTCGTAGCAGAAGTTTTTACCGGTTCGCCGGGGAAATATGTTGGTCTAGCAGAAACAATTAGAGGGTTTAAATTGATTCTTTCTGGAGAATTAGATGGTCTTCCTGAACAAGCCTTTTATTTGGTAGGCTACGAACTTAGAAATGGAGAGCAATTTGAAGAAATGACTTTAAATCTTTGTGTACTGACCCCCAATCGAATTGTTTGGGATTCGGAAGTGAAGGAAATCATTTTATCTACTAATAGCGGACAAATTGGAGTATTACCAAATCATGCGCCTATTGCCACAGCTGTAGATATAGGTATTTTGAGAATACGTCTTCTTAAAGACCAATGGTTAACGATGGCTCTGATGGGCGGTTTTGCTAGAATAAACAATAATGAGATCACTATTTTAGTAAATGATGCGGAAAAGAGTAGTGACATTGATCCACAAGAAGCACAGCAAACTCTTGAAATAGCAGAAGCTAATTTAAATAAGGCGGAAGGCAAGAGACAAACAATTGAGGCAAATCTAGCTCTTAGACGAGCTAAGACATGGGTAGAGGCTATCAATGTAATTTCATAA 1872 0.4022 MRINPTTSGPEISALEKKNQGRIAQIIGPVLDVAFPPGKMPNIYNALVVKGRDTVGQQINVTCEVQQLLGNNRVRAVAMSATEGLTRGMEVIDTGAPLSVPVGGTTLGRIFNVLGEPIDNLGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGYELRNGEQFEEMTLNLCVLTPNRIVWDSEVKEIILSTNSGQIGVLPNHAPIATAVDIGILRIRLLKDQWLTMALMGGFARINNNEITILVNDAEKSSDIDPQEAQQTLEIAEANLNKAEGKRQTIEANLALRRAKTWVEAINVIS 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1359 623 CDD F1-ATPase_delta 492 613 IPR001469 GO:0015986|GO:0045261|GO:0046933
Aed3g1359 623 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 19 97 IPR036121 GO:0046034|GO:1902600
Aed3g1359 623 ProSitePatterns ATP synthase alpha and beta subunits signature. 363 372 IPR020003 GO:0005524
Aed3g1359 623 Pfam ATP synthase, Delta/Epsilon chain, beta-sandwich domain 492 571 IPR020546 GO:0015986
Aed3g1359 623 Gene3D - 579 623 - -
Aed3g1359 623 Hamap ATP synthase subunit beta [atpB]. 18 490 IPR005722 GO:0015986|GO:0045261|GO:0046933
Aed3g1359 623 Pfam ATP synthase, Delta/Epsilon chain, long alpha-helix domain 576 619 IPR020547 -
Aed3g1359 623 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 375 487 - -
Aed3g1359 623 Gene3D - 375 491 IPR024034 -
Aed3g1359 623 Coils Coil 586 606 - -
Aed3g1359 623 Hamap ATP synthase epsilon chain [atpC]. 490 618 IPR001469 GO:0015986|GO:0045261|GO:0046933
Aed3g1359 623 Gene3D - 492 577 IPR036771 -
Aed3g1359 623 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 377 IPR027417 -
Aed3g1359 623 CDD ATP-synt_F1_beta_C 379 478 - -
Aed3g1359 623 Gene3D - 18 97 - -
Aed3g1359 623 CDD ATP-synt_F1_beta_N 19 98 - -
Aed3g1359 623 SUPERFAMILY Epsilon subunit of F1F0-ATP synthase N-terminal domain 490 572 IPR036771 -
Aed3g1359 623 TIGRFAM atpD: ATP synthase F1, beta subunit 20 478 IPR005722 GO:0015986|GO:0045261|GO:0046933
Aed3g1359 623 PANTHER F0F1-TYPE ATP SYNTHASE, BETA SUBUNIT 1 482 - -
Aed3g1359 623 TIGRFAM ATP_synt_epsi: ATP synthase F1, epsilon subunit 491 619 IPR001469 GO:0015986|GO:0045261|GO:0046933
Aed3g1359 623 CDD F1-ATPase_beta 97 377 - -
Aed3g1359 623 PANTHER ATP SYNTHASE 1 482 - -
Aed3g1359 623 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 152 372 IPR000194 GO:0005524
Aed3g1359 623 Gene3D - 98 374 IPR027417 -
Aed3g1359 623 Pfam ATP synthase alpha/beta family, beta-barrel domain 23 95 IPR004100 GO:0046034|GO:1902600
Aed3g1359 623 SMART AAA_5 164 356 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1359 Aed-Chr3 16321841 16323738 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1359 94 429 Primary Pumps ATPases(2) AT1G20260 27.049 7.11e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1359 K02112 - han:118484095 1082.78