Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1304 ATGATAATTAAGCGGAACCTGAAATCCGAAATGCCTAGTCTGAAACGGCGGCGACTCCGCGACGCGGCGGGCGAGGACGACGAGTGCGCCGCGGAGAGGAAGAAGAGGAGGAAGACGAACGGGTACTTCTACCCTCTGAATCTCCTCGCCGGCGTAATTCCGGTGAGCTTATGCGGGCTACTTGGTGCGTCGGAGAAAGCGAGCCACGTGGTGCCGAGCTCCGAGGGCGACAGCTGCGGCAAGAAGAATGCTTCGCGGCCGCCGCTGGTGCGGACGTCCCGGGGGCGGTTGCAGGCGCTGCCGTCGAGGTTCAACGATTCGGTGATTGAGGATTGGAGGAAGGACAGCAAGGTTGAGTGTGAATTAGACGATGAATATGAGAGTGTGAAGAAGTCGAGAAAAGGAAAGGGCAATAAGGGTCGAGGGTATTCGGCATTGTGTGAGGAGGTGCTGCATAAGAATTTTGATGCTGCCAGCAAGGGATTTGGGGAATTGAGGGGCAATGATGTGGGTGTTTTGAAGGAGGAGGAGGAGGAGAAGAAAGAGGGGTTGTATGGGTCAACAGACTTTTATGCTGGGGATATAGTGTGGGCCAAGGCAGGGATAAAGGAACCTTTTTGGCCTGCCATTGTCATTGATCCTATGTGTCAGGCACCGGAGCTTATTTCGAAGTCGTGTATTCCTGATGCTGCTTGTGTCATGTTTCTTGGCTACGCTGGGAGTGAAAATCAAAGGGAATATGCGTGGGTCAAGTATGGGATGATTTGTCCGTTTATTGATCATGTAGACAGGTTTCAGGGGCAGTCTGAATTGGGTTGCTATAACTATAATTCCTCTGAATTTCAAATGGCAATAGACGAGGCATTTTTGGCAGATCAGGGCTTTACAGAGAAGTTGATAGCAGATATAAATACAGCAGCTGGTAACACTAGTTGTGGTGATTCTGTACTGAAAGGCTTTCAGGAGGTCACTGCTTCAAACCAAAATGCAGCTTGTCACTTTCTGAACCAGGATTTATTTGATAAGAAGAAAGATATTCGACCTTGTGAAGTATGTGGATTGGAGCTTCCTTTCAAAATTTCAAAGAAAACAAAGGATTTGATTCCTGACAGCCTATTTCTATGTAAAACATGTGCTAGGTTAACAAAATCAAAACATTATTGTGGCATATGCAAGAAAATTTGGAATCATTCAGATAGCGGAAGTTGGGTGTGCTGTGATGGATGTAAAGTATGGGTGCATGCAGAATGCGACAAAATTTCTGGCAACCTTTTCAAGAATCTTGGAGGGTCTGATTATTTCTGTCCTACATGCAAAATGAAGTTTGATTTTGAGTTATCTGATTCAGAAAAATCACAGCCAATAGTCAAATGGAAAAAAAACAGTGGGCAGCTAATGCTTCCTAACAAGGTCACTGTTCTCTGCAATGGTGTGGAAGGCATATATTTTCCAAGCCTTCACTTAGTTGTATGCAAATGTGGTTTTTGCGAGACTAAAAAACAACCACTTAGAAGTTGGGAACGGCACACAGGTTCCAAATTTAGAAATTGGAGGACAAGTGTTCAGGTGAAAGGATCAATGCTATCGCTGGAAAAATGGATGCTGCAATTGGCTGAGTTTCATGCTAATGCTGTAGTTTCTGTGAAACCTAAAAAACCTTCCTTAAAAGAAAGGAAACAGAAATTGCTTACCTTTCTACAAGTGGTGAGATGTCAAATAGCGGTTCATCAAGAATGTTACGGAGCAAGAAATGCACGAGATTTTACGTCATGGGTTTGTAAAGCTTGTGAAACACCTGACATCAAGCGGGAATGTTGTCTTTGTCCTGTAAAAGGTGGTGCTCTAAAGCCAACTGATGTTGATACATTATGGGTTCATGTCACTTGTGCTTGGTTTCGACCTGAAGTGTCTTTTGCTAGTGATGAAAAGATGGAACCTGCTTTGGGTATTCTGAGTATTCCGTCGAGTTCTTTTGTGAAGATTTGTGTTATATGTAAGCAAATTCATGGTTCCTGCACTCAATGTTGCAAGTGTACCACTTATTTCCATGCCATGTGTGCATCAAGGGCTGGTTATCGCATGGAGTTGCATTGTATGGAGAAAAATGGTAAACAGACAACAAGGATGGTTTCTTATTGTGCTTACCACAGAGCTCCCAATCCAGACACTGTTTTGATTATGCAAACCCCTCTTGGGGTCATTTCGACCAAAAGCCTTCTTCAAACTAAGAAAAAAGCTGGGTCAAGGTTAATTTCATCTAAAAGAATAAAGGTTGAAGACACTTCTCCTGCAGAGAACACTAGACATGATCCATTCTCTGCTGCTAGGTGTCGAATCTTTCAAAGAACAAATCATACAAAAAAGAGAGCAGCACATGAAGTCATTGCTCATCATGTGAGGGGTCACTTCCATCATCCTTTAGATGCAATACGGAGTTTAAATGCATACAGAGTGGTAGACAGGCCTCCAGCATTTTCTTCTTTCAGGGAACGCCTTTATCATTTACAGAGAACGGAAAATGAACGAGTTTGCTTTGGTAGATCAGGCATACATGGATGGGGCCTCTTTGCTCATCGAAATATTCAGGAAGGGGAAATGGTTCTTGAATATCGTGGTGAACAAGTGAGGCGCAGCATTGCAGATCTAAGGGAGGCACGCTATAGATTAGAAGGGAAAGACTGCTATCTTTTCAAGATAAGTGAAGAAGTGGTAGTAGATGCCACTGATAAAGGAAATATAGCACGGCTAATTAATCATTCTTGTATGCCCAATTGCTATGCAAGGATTATGAGTGTGGGTGATGATGAGAGCCGGATTGCACTCATTGCTAAGACTGATGTGTCTGCTGGTGATGAGCTAACGTATGACTACTTGTTTGATCCTGATGAGCCAGATGAATTTAAAGTCCCTTGTTTATGTAAAGCACCAAACTGCCGGAAATTCATGAATTAG 2952 0.4367 MIIKRNLKSEMPSLKRRRLRDAAGEDDECAAERKKRRKTNGYFYPLNLLAGVIPVSLCGLLGASEKASHVVPSSEGDSCGKKNASRPPLVRTSRGRLQALPSRFNDSVIEDWRKDSKVECELDDEYESVKKSRKGKGNKGRGYSALCEEVLHKNFDAASKGFGELRGNDVGVLKEEEEEKKEGLYGSTDFYAGDIVWAKAGIKEPFWPAIVIDPMCQAPELISKSCIPDAACVMFLGYAGSENQREYAWVKYGMICPFIDHVDRFQGQSELGCYNYNSSEFQMAIDEAFLADQGFTEKLIADINTAAGNTSCGDSVLKGFQEVTASNQNAACHFLNQDLFDKKKDIRPCEVCGLELPFKISKKTKDLIPDSLFLCKTCARLTKSKHYCGICKKIWNHSDSGSWVCCDGCKVWVHAECDKISGNLFKNLGGSDYFCPTCKMKFDFELSDSEKSQPIVKWKKNSGQLMLPNKVTVLCNGVEGIYFPSLHLVVCKCGFCETKKQPLRSWERHTGSKFRNWRTSVQVKGSMLSLEKWMLQLAEFHANAVVSVKPKKPSLKERKQKLLTFLQVVRCQIAVHQECYGARNARDFTSWVCKACETPDIKRECCLCPVKGGALKPTDVDTLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSSSFVKICVICKQIHGSCTQCCKCTTYFHAMCASRAGYRMELHCMEKNGKQTTRMVSYCAYHRAPNPDTVLIMQTPLGVISTKSLLQTKKKAGSRLISSKRIKVEDTSPAENTRHDPFSAARCRIFQRTNHTKKRAAHEVIAHHVRGHFHHPLDAIRSLNAYRVVDRPPAFSSFRERLYHLQRTENERVCFGRSGIHGWGLFAHRNIQEGEMVLEYRGEQVRRSIADLREARYRLEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDESRIALIAKTDVSAGDELTYDYLFDPDEPDEFKVPCLCKAPNCRKFMN 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1304 983 ProSiteProfiles Extended PHD (ePHD) domain profile. 602 717 IPR034732 -
Aed3g1304 983 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 570 983 - -
Aed3g1304 983 PANTHER PHD FINGER PROTEINS 570 983 - -
Aed3g1304 983 SMART set_7 841 964 IPR001214 GO:0005515
Aed3g1304 983 Pfam SET domain 852 957 IPR001214 GO:0005515
Aed3g1304 983 SMART PHD_3 387 439 IPR001965 -
Aed3g1304 983 SMART PHD_3 661 717 IPR001965 -
Aed3g1304 983 SUPERFAMILY SET domain 834 980 IPR046341 -
Aed3g1304 983 Pfam PHD-finger 570 597 - -
Aed3g1304 983 Pfam PHD-zinc-finger like domain 604 716 - -
Aed3g1304 983 SUPERFAMILY FYVE/PHD zinc finger 385 443 IPR011011 -
Aed3g1304 983 PANTHER PHD FINGER PROTEINS 1 567 - -
Aed3g1304 983 Pfam PWWP domain 193 288 IPR000313 -
Aed3g1304 983 Gene3D SET domain 753 983 IPR046341 -
Aed3g1304 983 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 1 567 - -
Aed3g1304 983 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 598 719 IPR013083 -
Aed3g1304 983 SUPERFAMILY Tudor/PWWP/MBT 185 291 - -
Aed3g1304 983 Pfam PHD-finger 387 440 IPR019787 -
Aed3g1304 983 MobiDBLite consensus disorder prediction 70 96 - -
Aed3g1304 983 ProSiteProfiles Zinc finger PHD-type profile. 385 441 IPR019787 -
Aed3g1304 983 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 983 IPR025780 -
Aed3g1304 983 CDD PHD_TCF19_like 388 438 - -
Aed3g1304 983 ProSiteProfiles Post-SET domain profile. 967 983 IPR003616 -
Aed3g1304 983 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 382 442 IPR013083 -
Aed3g1304 983 ProSiteProfiles SET domain profile. 841 958 IPR001214 GO:0005515
Aed3g1304 983 SMART PostSET_3 967 983 IPR003616 -
Aed3g1304 983 CDD ePHD_ATX3_4_5_like 605 716 IPR041955 -
Aed3g1304 983 CDD SET_SETD1-like 828 979 - -
Aed3g1304 983 Gene3D - 186 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1304 Aed-Chr3 13720582 13735105 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1304 344 412 EF-hand Containing Proteins AT5G28340 55.072 1.60e-17 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aed3g1304 zf-HC5HC2H_2 2.7e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1304 - - gmx:100775276 1742.63