Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1296 ATGAAGACGCCAACACGCCACTCGCCGCCGGGTAACACTGGCCGGCGAGTGGAACACAATTCCGGTGAGATCGTCACGAGGTTCGAGAATGGTCGCCGGAAAAGGATTAAAATCAAACGAATGAAGTACACTTGCAAGACGAAGATCTGCGTCGGGAATGGCGGCGGCGGCGTGTCTCAACCGACGGCGGTGGATTTGGAGGGAGAGAAGAGAGAGATTCACGAGCACGTGGAGATATCGGTGTCGCTGGCGGCGGCGTCTTCGTTGGAAGAAGAAGAGCGATTGTCGTCGAAGCAACAAAACGACGGCGTTTTGTCGTACAGTTCAGCATCGGTGATAGGGAGCAGGAAGGAGATGGAGGACGCGGTGAGCGCGGAGATAGGGTTTGCGGGGAAGGAGAGAGGGAAGTGCGACTTCTTCGCGGTGTACGACGGCCACGGCGGAGCTCAGGTGGCGGAGGCGTGCCGGGAGAGGCTGCACCGGCTGGTGGCGGAGGAGGTGGAGGAGAGGAATGCTGCGAGTCACGTGGAATATTGGGACTGGCGGGGAGTGATGGAAGGGTGTTTTCGTAAAATGGACAGCGAGGTCGCCGGTAATGCGGCCGTCAGGACGGTGGGTTCCACGGCGGTTGTTGCCGTCGTCTCGGCGGAGGAGATTGTCGTGGCTAATTGCGGTGATTCTAGGGCCGTGTTGGGAAGAGGAGGTGAGACCGTGGACTTGTCTACTGATCATAAGCCCGACAGGCCCGATGAGTTGGTGCGAATTGAAGAAGCTGGTGGAAGGGTCATTAACTGGAATGGCCAGCGCGTGCTTGGTGTTCTTGCTACTTCACGATCCATAGGAGATGAGTACCTTCGACCTTATGTAATATCAAAACCAGAGGTGACAGTTAGCAAGAGAAGCAGCAAGGATGAGTATCTCATACTAGCAAGCGATGGATTGTGGGATGTGATGTCCAGTGAAGTTGCGTGCCAAGTTGTAAGGAAATGCCTCAACGGGCAATTTAGGAGAGTACTGTGCAATGGAGTTGGGAGGAATCATCAGATTCAGAAGAACCGTGCTGCCGAGGCTGCAGGCCTCTTGGCTGAGATAGCATTGGCAAAGGGAAGTAGAGATAACACCAGTGTCATTGTAGTTGACCTAAGAGGAACAGTAACATCTGATGACTGA 1170 0.5479 MKTPTRHSPPGNTGRRVEHNSGEIVTRFENGRRKRIKIKRMKYTCKTKICVGNGGGGVSQPTAVDLEGEKREIHEHVEISVSLAAASSLEEEERLSSKQQNDGVLSYSSASVIGSRKEMEDAVSAEIGFAGKERGKCDFFAVYDGHGGAQVAEACRERLHRLVAEEVEERNAASHVEYWDWRGVMEGCFRKMDSEVAGNAAVRTVGSTAVVAVVSAEEIVVANCGDSRAVLGRGGETVDLSTDHKPDRPDELVRIEEAGGRVINWNGQRVLGVLATSRSIGDEYLRPYVISKPEVTVSKRSSKDEYLILASDGLWDVMSSEVACQVVRKCLNGQFRRVLCNGVGRNHQIQKNRAAEAAGLLAEIALAKGSRDNTSVIVVDLRGTVTSDD 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1296 389 CDD PP2Cc 106 381 IPR001932 -
Aed3g1296 389 Gene3D - 94 386 IPR036457 -
Aed3g1296 389 PANTHER ALPHABET, ISOFORM E-RELATED 48 386 - -
Aed3g1296 389 Pfam Protein phosphatase 2C 109 374 IPR001932 -
Aed3g1296 389 SMART PP2C_4 96 379 IPR001932 -
Aed3g1296 389 ProSitePatterns PPM-type phosphatase domain signature. 139 147 IPR000222 GO:0043169
Aed3g1296 389 ProSiteProfiles PPM-type phosphatase domain profile. 106 381 IPR001932 -
Aed3g1296 389 PANTHER PROTEIN PHOSPHATASE 2C 51-RELATED 48 386 - -
Aed3g1296 389 SUPERFAMILY PP2C-like 103 382 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1296 Aed-Chr3 13101470 13108741 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1296 87 382 PP2C-type Phosphatase Gene Family AT2G29380 49.524 5.40e-89 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1296 K14497 - gmx:100807235 565.459