Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1295 ATGGAAAGTAGAGCAATAGCTACCACCATTCTTCTATTTCTGCAAACCTGTGCTGCTGCCTCGCTTATCCAAAACTGTCCACCTTCTTCATGCGGCAGCATCCACAACATAAGTTATCCCTTTCGACTCAGAGGTGACCCTCCCCTCTGCGGCGACAAGAGGTACGAATTAGATTGTGAGAACAACGCAACGGTTTTGACTCTGTTTTTAGGGAAATACCATGTGCAGGAAATCGATTACAAGAGATACAAAATCCAAGTGCGTGATGTGGGCGTTGTGGAGGAGGACGCTACTACTTGCTCCTTCATGCCGCGCTATTTCCTGTACTCTGGCAATTTCAGTGTCACGTATCTTGGTCCTGGACCAGATCCCCTGCAATTGGACAGATTTCAAGCGTCAATAGCGTATTTCAACTGTACGGATCAAATCACTAATGATCCTAGATACGTTGCTGTGGAAATCACCAGTGGTTGTGGCTCCGTTGGGTGCCAACTGAAGGTGGCTACTTTTTCAAATTGGGGAACAATGAAGCCCAACCAAAAAGTTTCCTATGCTGATGTACACAACATGCTTTTGCATGGATTTGGACTCTCTTGGTTATATGTTATTTGTGAAAATCAATGCGGAGGGGGGAAGGATTGTAGTGTGGTCAATGAATCCACGGGTGAAGTTCAATGTGGCCGGCCACTGATACAAGACGCGAACTGTCGCTGGGTCTACAACGCGAATGGGTCCACGTATACGTGCGATGGCAGTGGAGTATTGTATAAAATTTCCGCCATAGGTTTTATGCAAATTTTTGGCTTGAATAAAGCTACAGGGTTTGAAGGAATTGAAGTTGAAATAGGAAGAATCACAGGAAGATATATCCTACCATACATAACAATAAGATTTTTATTAGGTATAGTAGCTTTCATTGTGTTGCTGCTTTGTAAATGGGAAAGAAGGAATAAATCAAACTACGAACATATTGAAGCTTTTCTACAAGAAAACACCCTTATGCCAATAAGATACTCATATAAAGATATAAAGCACATGACTAAGGGGTTTAAGGAAAAGCTAGGTCAAGGAGGATTTGGCTTGGTATACAAAGGAATGTTACGTAGTGGGTCACTTGTAGCAATAAAGATGTTAAATAAATCAAAGGAAAATGGGCAAGATTTCATTAGTGAAGTTGGAACTATTGGAAGAATACACCATATGAATGTGGTGCGACTTATTGGATTTTGTGTTGAGGAATCAAATCATGCTCTTGTTTATGAATTCATGTCCAATGGCTCTCTTGATAAATATATTTTCTCCAAGCAAGATAGTATCTCTTTAACTTACAGGCAAATATACGAGATATCTCTTGGAGTGGCTCGTGGTATTGCTTATTTACATCAAGGTTGTGACATGCAAATTTTACATTTTGATATCAAGCCTCACAATATCCTTCTTGACGATAACTATATCCCTAAAGTTTCAGACTTTGGTCTAGCAAAGCTTTATCCTATAAACAAAAGCATTGTCACTTTGACTGCAGCAAGGGGAACAATTGGATACATGGCTCCTGAGTTATTCTACCATAATATTGGGGGAGTATCGTACAAGGCTGACATTTATAGCTTTGGAATGCTTTTGATGGAAATGGCAAATAGGAAAAGAAACTATAGTCTACATATAGATGATTCAAGTGAATTTTTCTTTCCTCTCTGGATATATGACCAATTAAGTGAAGAAAATAAGAAAGAAATGGAAGATATTACCAAAGAGGAATACAGTAATGAGGCAAAGAAAATGTTTTTAGTAGCATTATGGTGTATACAACTTAAACCAAGTGATCGTCCTTCAATGAACAAAGTAGTGGAGATGTTAGAAGGAGAACTTGAGAACATTGAAATGCCTTCTAAGCCTTCCTTATACCCACAATATATGATTGAAAAGGATGCCAAAACCAAGTCAGATCAAACCTTTTCAACTGATTCTATAGGTTCTACGGGTTATCTTGAAGAAAGTGCTTTTCATTCTGATTTAGAGTATTCTTCTTAA 2031 0.3895 MESRAIATTILLFLQTCAAASLIQNCPPSSCGSIHNISYPFRLRGDPPLCGDKRYELDCENNATVLTLFLGKYHVQEIDYKRYKIQVRDVGVVEEDATTCSFMPRYFLYSGNFSVTYLGPGPDPLQLDRFQASIAYFNCTDQITNDPRYVAVEITSGCGSVGCQLKVATFSNWGTMKPNQKVSYADVHNMLLHGFGLSWLYVICENQCGGGKDCSVVNESTGEVQCGRPLIQDANCRWVYNANGSTYTCDGSGVLYKISAIGFMQIFGLNKATGFEGIEVEIGRITGRYILPYITIRFLLGIVAFIVLLLCKWERRNKSNYEHIEAFLQENTLMPIRYSYKDIKHMTKGFKEKLGQGGFGLVYKGMLRSGSLVAIKMLNKSKENGQDFISEVGTIGRIHHMNVVRLIGFCVEESNHALVYEFMSNGSLDKYIFSKQDSISLTYRQIYEISLGVARGIAYLHQGCDMQILHFDIKPHNILLDDNYIPKVSDFGLAKLYPINKSIVTLTAARGTIGYMAPELFYHNIGGVSYKADIYSFGMLLMEMANRKRNYSLHIDDSSEFFFPLWIYDQLSEENKKEMEDITKEEYSNEAKKMFLVALWCIQLKPSDRPSMNKVVEMLEGELENIEMPSKPSLYPQYMIEKDAKTKSDQTFSTDSIGSTGYLEESAFHSDLEYSS 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1295 676 ProSiteProfiles Protein kinase domain profile. 348 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g1295 676 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672|GO:0006468
Aed3g1295 676 Pfam Protein kinase domain 351 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g1295 676 PANTHER RUST RESISTANCE KINASE LR10-RELATED 8 160 IPR045874 GO:0004672
Aed3g1295 676 PANTHER RUST RESISTANCE KINASE LR10-RELATED 161 645 IPR045874 GO:0004672
Aed3g1295 676 Gene3D Phosphorylase Kinase; domain 1 310 422 - -
Aed3g1295 676 Gene3D Transferase(Phosphotransferase) domain 1 423 632 - -
Aed3g1295 676 SUPERFAMILY Protein kinase-like (PK-like) 332 620 IPR011009 -
Aed3g1295 676 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 8 160 - -
Aed3g1295 676 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 161 645 - -
Aed3g1295 676 Pfam Wall-associated receptor kinase galacturonan-binding 26 89 IPR025287 GO:0030247
Aed3g1295 676 SMART serkin_6 348 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g1295 676 ProSitePatterns Protein kinases ATP-binding region signature. 354 376 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1295 Aed-Chr3 13005663 13027964 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1295 26 655 Receptor kinase-like Gene Family AT1G66910 34.894 2.99e-105 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Aed3g1295 Pkinase 2.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1295 - - pvu:PHAVU_001G075800g 767.689