Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1290 ATGGCTCAACCAAGTTCAACAACTCCCAATGGTACTAATTTGGTGACCATGATCATTGGGTTTGGGATGAGTGCCACTTTCATTGTGCTTGTGTGCACCAAAACCATTTGTGGAAGGCTAAGAGGGGAACATCATGTTAATGACCCTGAATCTGATCTTGTTTTGCTTGATGCAATCCCTACTTTGAAGTTCAACCAAGAGGCTTTCAATTCCTTTGAACACACACAGTGTGTAATATGTTTGGCAGATTACAAAGAAAGAGAAGTATTGCGTATGATGCCAAAATGTGGCCACACTTTTCATCTTTCTTGCATTGATATATGGCTGAGAAAACAATCTACCTATCCAGTATGCCATCTTCCGTTGAAGAACTCCAAAATGAAACATGTGAGACGTGTGACATTTACCATGAGTCAGTCCTTTGATGCGTCTCACATGTCAGAAAGAAATGAAGATACTATAGCTAGGGTTGATTTAGGATGGAGTTACTTGAGTGGAGAAGGGAATAATTTAACAACAACCATATGTTTGGATGTGTTCACTTTATAG 549 0.3953 MAQPSSTTPNGTNLVTMIIGFGMSATFIVLVCTKTICGRLRGEHHVNDPESDLVLLDAIPTLKFNQEAFNSFEHTQCVICLADYKEREVLRMMPKCGHTFHLSCIDIWLRKQSTYPVCHLPLKNSKMKHVRRVTFTMSQSFDASHMSERNEDTIARVDLGWSYLSGEGNNLTTTICLDVFTL 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1290 182 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 129 IPR013083 -
Aed3g1290 182 PANTHER OS02G0676500 PROTEIN 10 43 - -
Aed3g1290 182 PANTHER OS11G0150450 PROTEIN 10 43 - -
Aed3g1290 182 PANTHER OS11G0150450 PROTEIN 52 152 - -
Aed3g1290 182 SUPERFAMILY RING/U-box 69 124 - -
Aed3g1290 182 SMART ring_2 77 118 IPR001841 -
Aed3g1290 182 ProSiteProfiles Zinc finger RING-type profile. 77 119 IPR001841 -
Aed3g1290 182 Pfam Ring finger domain 76 118 IPR001841 -
Aed3g1290 182 PANTHER OS02G0676500 PROTEIN 52 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1290 Aed-Chr3 12643069 12646932 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1290 66 122 C3H Transcription Factor Family AT4G10160 50.877 4.78e-16 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1290 - - ccaj:109802319 243.817