Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1281 ATGGAACAAACAGCGTGCGAGGAATTACCGAAAAATGCTTTGGATTTCAAGTACGAGAAGGTTATCGAAACAGTTGATGAATCAATCATATGCCCCACTCCACAAAAGAACGTGGAACCCTTAACCGTCAAGTCCAGAGAGGGACAAACCAATCTTCCTGAAAAATACTCTACACTTGCAGATTTGTTTGGTCACGTGAGTTGTTCACTCAGATTGCTGCATCTGTGTAAAAAGCCTCAAAATTTTCAAAATGTATGCCGCCAGGTTGAAGTTCTTTCGAAGAGGAAATTCTCCCATGCTCATGTTGCGCAGATGAAGTATATACTCCCTGAAAGTGTGTGTATAGATAAGGTGCTTGTTCATGATAAGAAAAGCTTGTGTATGGTGCCCGATATGAAGATCACCTTTAGATTTGAGGTTGTGAAAGATTGCCCCGGTGAATTGGCTGATCTGACCCTTTGGAGATATTTTAAATCTAAGCTGATTGATTTCTTTGATATGCATCCTGAGGTTGCTGACATTCCAGAGGCCCCACTGCCCGAACCCTTTGGCAAACAAACTTGTAGATTGAATTGTGAAGATTCACACATTGAAGAATTTACTGGCCAATCCCTGGATGTAAATTCTTCAACGGAAGTTTTGTCAATTTCCAATCAAACCGAAATGTTGCCAGAGCAATTGCAATTGTATCCAACTAGACACTTTTCTCGGAAGAATATTACCAACCAAGCAGAAAAGGCTCAATGCTTTTCACCCACAAAAACTTCTCCATCATTTCATGCATCTGATTGTCTGGATAATGAAGAAAGTGAAAAAGCACTGCTGAAAGAATGTGTACCATTATCTGATGATTGGGCTTATCCGATTACAGAAAGAGGGAACCAGAAGGAATCATTTTCTTTGTGTTTTCAACCTAGTGTTATTAATACACCAGTACATATGATCCACCCACCACATTCTGTTACGTGCGCTAATTCTGAAAGCCTAGATATGAAAAATATCTCCTGTGCTGCTGATAGTTTTATTACAGAGACACCTTCCCAGTCAGCACCTGCGAGATTATTGCCCATTTCTGATGTTAAGCTTCAGAACATGCCTACCCAAAAGTCAACATCTTCTCAAAAGCCAGCAAAAAGAGTGCTTGACTTTTCACTCATGGAGGACAATGATGGCTTGGGCATTGGAGTAGACATGTTAGAATCTAGCAGTGCTCTGCATGAATTTGATAGCTTCCCTGAATCTAGCAGAGGATGTTGTAAGGATTGCAATGCTTTTGGGTCTGTTTTGGTACCTCAGGAGGCAGAAGATAGCCTCAGTTATGCTTTTGAGAAAATTATCCAAAAGCAAGCTGGTTTAGACACACAACATAAAAAATCTTCACCATTGGTGGATCTGGTTAATGTGATTCACTCTATATTTCAATCTGTCCAAAGAATTCCAATCACAAAAGAGGAGCTCCTGCATAAGATACTTATGAACAGTTTGGATTTTGTGGAGATGAGAGAAGCTGAAGAACAAATTGAGTCTCTGGAAAAGTTGGTGCCAGACTGGATCTGCAAGAAATTGGTTCCTACTGGAGATACTATGTACTGGTGA 1596 0.4035 MEQTACEELPKNALDFKYEKVIETVDESIICPTPQKNVEPLTVKSREGQTNLPEKYSTLADLFGHVSCSLRLLHLCKKPQNFQNVCRQVEVLSKRKFSHAHVAQMKYILPESVCIDKVLVHDKKSLCMVPDMKITFRFEVVKDCPGELADLTLWRYFKSKLIDFFDMHPEVADIPEAPLPEPFGKQTCRLNCEDSHIEEFTGQSLDVNSSTEVLSISNQTEMLPEQLQLYPTRHFSRKNITNQAEKAQCFSPTKTSPSFHASDCLDNEESEKALLKECVPLSDDWAYPITERGNQKESFSLCFQPSVINTPVHMIHPPHSVTCANSESLDMKNISCAADSFITETPSQSAPARLLPISDVKLQNMPTQKSTSSQKPAKRVLDFSLMEDNDGLGIGVDMLESSSALHEFDSFPESSRGCCKDCNAFGSVLVPQEAEDSLSYAFEKIIQKQAGLDTQHKKSSPLVDLVNVIHSIFQSVQRIPITKEELLHKILMNSLDFVEMREAEEQIESLEKLVPDWICKKLVPTGDTMYW 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1281 531 Pfam DNA replication factor Cdt1 C-terminal domain 449 518 IPR032054 -
Aed3g1281 531 Coils Coil 500 520 - -
Aed3g1281 531 PANTHER DNA REPLICATION FACTOR CDT1 12 530 IPR045173 GO:0003677|GO:0030174|GO:0071163
Aed3g1281 531 Gene3D - 451 530 IPR038090 -
Aed3g1281 531 CDD Cdt1_m 42 187 IPR014939 -
Aed3g1281 531 Pfam DNA replication factor CDT1 like 52 115 IPR014939 -
Aed3g1281 531 SUPERFAMILY "Winged helix" DNA-binding domain 44 183 IPR036390 -
Aed3g1281 531 PANTHER EXPRESSED PROTEIN 12 530 - -
Aed3g1281 531 SMART CDT1_2 52 181 IPR014939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1281 Aed-Chr3 12355573 12358407 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1281 465 529 Core DNA Replication Machinery Family AT3G54710 47.692 3.19e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1281 K10727 - gmx:102670055 890.952