Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1271 ATGACAATGGAGAGAAAGCGAAAACAGCCACCTCAACCCACTGAATCCGAAGAACCCCCTCTCAAGCAACAGCAACATCAACCCCAATTGGATACAGAAGCTGAGATCAAAGAAGAGGAACAATACGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTAGAAGAAGAAGCTGAAGAAGTAGAAGAAGAAGAAAGCGAAGAAGAAGCACCAAACAACGAAACACCGAAGCCACCCTCCACGTCATCATCATCCCCCAACAATGACGACGGCGACGATGAACCCATCCAGAACCTTCTAGAACCTCTTGGAAAGAACGAGATCGCAAAGCTTCTTATAGAGGCGGCGTTGAAGCACCGCGACGTGGCGGAGCGGATCCGGCGCACCGCCGATGCCGACCCGGCGCTCCGCAAGATCTTCGTCCACGGCCTCGGCTGGGACGCCACCGCCGAAACCCTCGCCTCCGCGTTCCGTCCCTACGGCGAGATCGAGGATTGCAAGGCCGTCACTGACAAGGCCACCGGGAAGTCCAAGGGCTACGGCTTCGTCCTCTTCAAGACCCGGCGTGGCACCAGCGCCGCCCTCCGCGAGCCGCAGAAAAAGATCGGCCACCGCATTGCCGCCTGCCAGCTGGCATCCGTGGGCCCGGTCCAGCCAACGTCGTTGCTGCCGCACCCGGCGAGGGCCTCGACGGGGCAGGAATTCATGCAGAGGAAGATATACGTGAGCAATGTGGGTGCGGAATTGGACCCGCAGAGGCTTCTGGCGTATTTTGCGCAGTTTGGGGAGATTGAGGAAGGACCATTGGGTCTCAATAAGGTCACCGGGAAACCGAAGGGGTTTTGTTTGATTGTTTATAAGAGTGTGGAGGGTGCGAAGAGGGTGTTAGAAGTGCCGCATAAGAAGTTTGAGGGGCATATATTGCATTGCCAGAAGGCAATTGATGGTACCAAGCAACAGCAAGTGTTGCAGAGTAATTCTTCTCATCAGAGTGGTGGACTTGTTGGTGGTGGTGCTGCGTTGGCACCGGGGCATTTGATGGCTCTGCCAGGGCTGGTGGTTGGAGGAGTTTCGGTGGAGGCGGCGATGCAGCCAGTGATTCCAGCTGGGATTGGGGCGACGCTGTCAGCGCTGCTGGCATCTCGGGGGGTGGCGGGGTTGTTGGGGATAGGGTTGCCAGCGACGGTGAGCCCTGGCGGTTATGGTGGTGGACAGGGGAGTGTGAATCCAGGGAGTGTTGGTGTTGGGGGGTATGGGAATCAAGTAGGGTTGCAGAGTGCATATGCAATCCAGCAGCTGGGGGTGATAGGTGGATCTGGAAGAGGGCAGCAGCAGCAGCAGCAGCAACAACAACCACATGGTGTTGGACAGTATGGTGGGGTGTTGCCTTACATGGGTCACTAG 1401 0.5653 MTMERKRKQPPQPTESEEPPLKQQQHQPQLDTEAEIKEEEQYEEEEEEEEEEVEEEAEEVEEEESEEEAPNNETPKPPSTSSSSPNNDDGDDEPIQNLLEPLGKNEIAKLLIEAALKHRDVAERIRRTADADPALRKIFVHGLGWDATAETLASAFRPYGEIEDCKAVTDKATGKSKGYGFVLFKTRRGTSAALREPQKKIGHRIAACQLASVGPVQPTSLLPHPARASTGQEFMQRKIYVSNVGAELDPQRLLAYFAQFGEIEEGPLGLNKVTGKPKGFCLIVYKSVEGAKRVLEVPHKKFEGHILHCQKAIDGTKQQQVLQSNSSHQSGGLVGGGAALAPGHLMALPGLVVGGVSVEAAMQPVIPAGIGATLSALLASRGVAGLLGIGLPATVSPGGYGGGQGSVNPGSVGVGGYGNQVGLQSAYAIQQLGVIGGSGRGQQQQQQQQQPHGVGQYGGVLPYMGH 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1271 466 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 237 326 IPR000504 GO:0003723
Aed3g1271 466 MobiDBLite consensus disorder prediction 36 69 - -
Aed3g1271 466 SUPERFAMILY RNA-binding domain, RBD 236 337 IPR035979 GO:0003676
Aed3g1271 466 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 3 429 - -
Aed3g1271 466 MobiDBLite consensus disorder prediction 1 97 - -
Aed3g1271 466 Gene3D - 28 219 IPR012677 -
Aed3g1271 466 Gene3D - 224 330 IPR012677 -
Aed3g1271 466 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 136 246 IPR000504 GO:0003723
Aed3g1271 466 PANTHER UBP1-ASSOCIATED PROTEIN 2A 3 429 - -
Aed3g1271 466 MobiDBLite consensus disorder prediction 72 91 - -
Aed3g1271 466 SUPERFAMILY RNA-binding domain, RBD 128 215 IPR035979 GO:0003676
Aed3g1271 466 CDD RRM_RBM24_RBM38_like 237 312 - -
Aed3g1271 466 SMART rrm1_1 137 209 IPR000504 GO:0003723
Aed3g1271 466 SMART rrm1_1 238 310 IPR000504 GO:0003723
Aed3g1271 466 Coils Coil 29 68 - -
Aed3g1271 466 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 239 307 IPR000504 GO:0003723
Aed3g1271 466 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 138 202 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1271 Aed-Chr3 12092822 12097994 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1271 229 312 C2H2 Transcription Factor Family AT2G19380 32.143 3.02e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1271 K12741 - gmx:100819802 386.726