Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1249 ATGGACGAAGCGAAGGAAAAGTGTTGGAGAATGGAAGTGGAGGAGAAGCTGAAGAGGCTGCAATCTCTTCTCTTCGGCACAGAGCGATCTCTTGAAAACAACGACTTCTCCTCCGCCTACGTTCTCGCGCTTCGTCTCCTCGGATTCCTCGACGCGCACTCCCACTCCGACGCAGACGACGAAGCCTTCGTCCAACCGATTCGCCGCGATGCTCTCACCAAACTCCACTTCGCTCGCCATTCCCTCACTCCTCAATCTGATCGCCAAGCTTTTGAGCAAGCAAAGAAATCCCCAGGATGCATTTTTGGCTCAACAGGAGATATAGACATTGAGAAGATTCAGAAATCAAAGTACTTCCAAGCTCTTGTCAAACAATCTAAAGAAAAAGATGGGAGTCAATTGGTTGATCAGCTGGGGAAACATGACAAAGCAGCCAGCAAAGCCTCTAAGCAAATGGTGCAAACTAAGTTACCATCCATGTATGGGAAAAGCATCTTGAGAACTAGCACTGGTTCCAAGAGTTTTTTGAACATGAAAAATAATAGCTCTGAGGACTGCATGATTCTTGATAGGCCTCAATCTCATGCCAGCCATACAAAGGGTCCTGGTTTCTCTTCTATCTTGCAAGTTGAAGGAGAAGAAAGAGCTTTTGGAAACACATTCTCCACAAAACGTGTACATATGGAAAACAATAGCCCCAGAGTTGGATTTGTGAAGTCACCTTCAAGTAAGGAGGATGTTAACCCTGATGTTTGTGGCAATGGGTTTGTTACTGCCAGAGCAAAACTGGAAATGGAAGCAAAGCAAAAGCGAGGCGTAGGTGGTTCACCCAGTGCCTCTGTCTCACCACAATGTGATAACAGTTCTGCCAACAGGTTGTATGGCGGAAGATCATATGGTGTTTCACGACGTGGCGTCCGTGGTAATTTTGTTCCCCCTATTAAATCCAATGGGAACAATACTGGAAATATGAGCACACGCATTGCTGGAAAATGTGATGATTCTTTAGATGACTCTACAAAGAAATGTCTGGAAATCCTGTGTGGTCCTGATGGTGAGCTTCCTGAGAAATTGAGGAATTTGGAACCTCGCCTCATTGAACATGTTAGTAACGAGATTATGGATAGAGATCCCAATGTCCGGTGGGATGATATTGCTGGATTGGAGCATGCCAAGAAATGTGTCAATGAGATGGTTGTATATCCTCTGCAACGTCCTGACATATTCCAGGGCTGTCGTTCCCCTGGGAGGGGTCTTCTTCTGTTTGGTCCCCCAGGAACTGGTAAAACAATGATAGGAAAAGCCATAGCAGGGGAGGCGAAGGCAACCTTCTTTTACATATCTGCCAGTTCGTTGACTAGCAAGTGGATTGGGGAAGGTGAAAAGCTAGTAAGAGCCCTTTTCGGAGTTGCCAGTTGTCGTCAGCCAGCAGTAATTTTTGTTGATGAAATAGATTCTCTCCTGTCTCAGCGTAAATCAGACGGTGAGCATGAATCAAGTAGACGGCTAAAGACGCAGTTTCTCATTGAAATGGAAGGCTTTGACAGTGGTAGCGAGCAAATTCTGCTTATAGGGGCAACAAATCGTCCCCAAGAGCTTGATGAAGCAGCACGAAGGAGACTTACTAAAAGACTTTATATTCCGCTACCTTGCTCAGGTTATTCAGGATCAGACATGAAAAACTTAGTGAAGGATGCTTCTATGGGACCCTTAAGAGAGGCTTTAAGTCGAGGCATAGAAATTACAAAGTTGAAAAAGGAAGATATGCGACCCGTAACTCTTCAGGACTTCAAGAATTCCCTACAAGAGGTGCGGCCTTCTATTTCCCCAAATGAACTTGGAACTTATGAACAATGGAACAAGCAATTTGGAAGCCTATCACTGTAG 1887 0.452 MDEAKEKCWRMEVEEKLKRLQSLLFGTERSLENNDFSSAYVLALRLLGFLDAHSHSDADDEAFVQPIRRDALTKLHFARHSLTPQSDRQAFEQAKKSPGCIFGSTGDIDIEKIQKSKYFQALVKQSKEKDGSQLVDQLGKHDKAASKASKQMVQTKLPSMYGKSILRTSTGSKSFLNMKNNSSEDCMILDRPQSHASHTKGPGFSSILQVEGEERAFGNTFSTKRVHMENNSPRVGFVKSPSSKEDVNPDVCGNGFVTARAKLEMEAKQKRGVGGSPSASVSPQCDNSSANRLYGGRSYGVSRRGVRGNFVPPIKSNGNNTGNMSTRIAGKCDDSLDDSTKKCLEILCGPDGELPEKLRNLEPRLIEHVSNEIMDRDPNVRWDDIAGLEHAKKCVNEMVVYPLQRPDIFQGCRSPGRGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLIGATNRPQELDEAARRRLTKRLYIPLPCSGYSGSDMKNLVKDASMGPLREALSRGIEITKLKKEDMRPVTLQDFKNSLQEVRPSISPNELGTYEQWNKQFGSLSL 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1249 628 Pfam ATPase family associated with various cellular activities (AAA) 419 549 IPR003959 GO:0005524|GO:0016887
Aed3g1249 628 MobiDBLite consensus disorder prediction 268 293 - -
Aed3g1249 628 SMART AAA_5 415 551 IPR003593 -
Aed3g1249 628 CDD AAA 412 549 - -
Aed3g1249 628 Pfam Vps4 C terminal oligomerisation domain 590 624 IPR015415 -
Aed3g1249 628 PANTHER AAA DOMAIN-CONTAINING 552 625 - -
Aed3g1249 628 PANTHER FIDGETIN-LIKE PROTEIN 1 552 625 - -
Aed3g1249 628 PANTHER FIDGETIN-LIKE PROTEIN 1 68 551 - -
Aed3g1249 628 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 372 609 IPR027417 -
Aed3g1249 628 Gene3D - 605 620 IPR027417 -
Aed3g1249 628 Gene3D - 378 549 IPR027417 -
Aed3g1249 628 ProSitePatterns AAA-protein family signature. 521 540 IPR003960 GO:0005524|GO:0016887
Aed3g1249 628 PANTHER AAA DOMAIN-CONTAINING 68 551 - -
Aed3g1249 628 Gene3D - 553 604 - -
Aed3g1249 628 MobiDBLite consensus disorder prediction 275 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1249 Aed-Chr3 11210991 11217743 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1249 334 626 Calmodulin-binding Proteins AT3G56690 29.730 6.13e-38 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1249 K22766 - gmx:100776024 1125.15