LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed3g1239	ATGTATGACAGTGATAATCATGATCAGATAATTGGAAGCATTGGAGCTGTAGCTGCAGGCTTAGATTTAGGAAAAGAAGGGCCATTGGTACACATTGGAAGCTGCATTGCTTCCATACTAGGCCAAGGAGGCCCTGACAATTACAGGATCAAATGGCGATGGATTCGGTATTTCAACAACGACCGCGACCGTCGCGATCTCATCACCTGCGGCGCCTCCTCAGGGGTTTGTGCAGCCTTCAGGGCACCTGTGGGAGGAGTTCTCTTTGCTCTTGAGGAGGTTGCAACTTGGTGGAGAAGTGCTCTTCTCTGGAGAACATTTTTCAGTACTGCTGTGGTTGTGGTGGTGCTGAGGGCCACTATTGAACTTTGCCACAAGGGGAAGTGTGGCCTTTTTGGTGAAGGAGGACTCATCATGTTTGATGTGAGTGATGTTACTGTGAGGTACAATGTGATGGATATTATCCCTGTTGTTATCATTGGAGTTCTTGGTGGGGTTTTGGGAAGCCTTTACAACTATCTTCTCCATAAGCTCCTCCTGAGTCTCTCAGTTGCAATCTTCACATCAGTGTGCCAATATGGCCTCCCATTCCTTGCAAAATGCACCCCTTGTGATCCCTCCTTCCCAGATGTCTGCCCCACGAACGGCCGCGCTGGAAACTTCAAACAATTCAACTGTCCAAACGGCCACTACAACGATCTTGCCACTCTTCTCCTCACCACCAACGATGATGCAGTGAGAAACATCTTCTCAACCAACACCCCTCTTGAATACCAACCCTCCTCCATCATAATCTTCTTTGCACTCTATTGTATACTAGGCCTAATCACCTTTGGCATTGCAGTGCCATCAGGGCTCTTCCTCCCCATCATCCTCATGGGCTCCGGCTACGGCCGCCTCCTTGGGATCCTAATGAGGCCCCACACCAACATTGATCAAGGACTCTTTGCAGTTCTTGGTGCAGCCTCACTCATGGCTGGTTCAATGAGAATGACAGTGTCACTTTGTGTGATCTTCCTTGAACTAACAAACAACCTTTTACTTCTACCAATAACAATGATTGTTCTCCTCATAGGCAAAACTGTTGGAGACAGCTTCAACCCAAGCATCTATGAGATCATCCTCCACCTCAAGGGCCTTCCTTTTATGGATGCAAACCCTGAGCCATGGATGAGAAACCTCACTGTGGGAGAGCTTGTTGATGTGAAGCCATCAGTGGTTGGCTTCAGAGGAGTTGAGAAAGTTGCCAACATTGTCAATGCCTTGAGGAACACTACACATAATGGTTTTCCTGTGATGGATTGTGGAGTGGTGGTGGCTAATGAGTCAATAGAACTTCATGGACTCATTTTGAGAGCACACCTTATCCAAGTGTTGAAGAAGAAGTGGTTCTTGAAGGAGAGAAGGAGAACTGAGGAGTGGGAAGTCAGGGAGAAGTTTACATGGGTGGAGCTTGCTGAGAGAGAAGGGAACATTGAAGATGTGCCTGTGACTAAAGAGGAGATGGAGATGTTTGTTGATCTTCATCCTCTCACCAATACGACGCCGTTTACAGTGTTAGAGAGGTTTGGTGTTCTCGCTCCTCTCTTTGGCCTCCAACTTCCCATGGCCTACCATGGAATTACCTTAGACCACCGCCCCTGGCTGTTGTCCCTTCCGATGTTGCCACACTTGCATGTTTCCAAGACGCCGCGCAATTGCACGCCGCTACCTTATAGTGCGTCGCCGCACAATTGCACTTCGTCGATTTGTAGTGTGCCGCCATGGAGTAGACAAATACTACCACCTTCGTGTTAG	1797	0.483	MYDSDNHDQIIGSIGAVAAGLDLGKEGPLVHIGSCIASILGQGGPDNYRIKWRWIRYFNNDRDRRDLITCGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLRATIELCHKGKCGLFGEGGLIMFDVSDVTVRYNVMDIIPVVIIGVLGGVLGSLYNYLLHKLLLSLSVAIFTSVCQYGLPFLAKCTPCDPSFPDVCPTNGRAGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSTNTPLEYQPSSIIIFFALYCILGLITFGIAVPSGLFLPIILMGSGYGRLLGILMRPHTNIDQGLFAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIGKTVGDSFNPSIYEIILHLKGLPFMDANPEPWMRNLTVGELVDVKPSVVGFRGVEKVANIVNALRNTTHNGFPVMDCGVVVANESIELHGLILRAHLIQVLKKKWFLKERRRTEEWEVREKFTWVELAEREGNIEDVPVTKEEMEMFVDLHPLTNTTPFTVLERFGVLAPLFGLQLPMAYHGITLDHRPWLLSLPMLPHLHVSKTPRNCTPLPYSASPHNCTSSICSVPPWSRQILPPSC	598

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Aed3g1239	598	SUPERFAMILY	CBS-domain pair	387	523	IPR046342	-
Aed3g1239	598	Gene3D	Clc chloride channel	9	385	-	-
Aed3g1239	598	PANTHER	CHLORIDE CHANNEL PROTEIN	9	525	-	-
Aed3g1239	598	Pfam	Voltage gated chloride channel	9	363	IPR001807	GO:0005247\|GO:0006821\|GO:0016020\|GO:0055085
Aed3g1239	598	SUPERFAMILY	Clc chloride channel	10	385	IPR014743	-
Aed3g1239	598	PRINTS	Chloride channel signature	73	92	IPR001807	GO:0005247\|GO:0006821\|GO:0016020\|GO:0055085
Aed3g1239	598	PRINTS	Chloride channel signature	282	302	IPR001807	GO:0005247\|GO:0006821\|GO:0016020\|GO:0055085
Aed3g1239	598	PRINTS	Chloride channel signature	332	351	IPR001807	GO:0005247\|GO:0006821\|GO:0016020\|GO:0055085
Aed3g1239	598	PRINTS	Chloride channel signature	9	28	IPR001807	GO:0005247\|GO:0006821\|GO:0016020\|GO:0055085
Aed3g1239	598	PRINTS	Chloride channel signature	314	330	IPR001807	GO:0005247\|GO:0006821\|GO:0016020\|GO:0055085

Showing 1 to 10 of 15 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed3g1239	Aed-Chr3	11002112	11007028	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed3g1239	9	529	Ion Channels	AT5G40890	77.467	0.0	831

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed3g1239	K05016		-	gmx:778094	915.605

Showing 1 to 1 of 1 entries

Previous1Next

Event-related genes

Show entries

Search:

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed9g1213	9	9452649	9456750	Aed3g1239	3	11002112	11007028	PCT

Showing 1 to 1 of 1 entries

Previous1Next