Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1239 ATGTATGACAGTGATAATCATGATCAGATAATTGGAAGCATTGGAGCTGTAGCTGCAGGCTTAGATTTAGGAAAAGAAGGGCCATTGGTACACATTGGAAGCTGCATTGCTTCCATACTAGGCCAAGGAGGCCCTGACAATTACAGGATCAAATGGCGATGGATTCGGTATTTCAACAACGACCGCGACCGTCGCGATCTCATCACCTGCGGCGCCTCCTCAGGGGTTTGTGCAGCCTTCAGGGCACCTGTGGGAGGAGTTCTCTTTGCTCTTGAGGAGGTTGCAACTTGGTGGAGAAGTGCTCTTCTCTGGAGAACATTTTTCAGTACTGCTGTGGTTGTGGTGGTGCTGAGGGCCACTATTGAACTTTGCCACAAGGGGAAGTGTGGCCTTTTTGGTGAAGGAGGACTCATCATGTTTGATGTGAGTGATGTTACTGTGAGGTACAATGTGATGGATATTATCCCTGTTGTTATCATTGGAGTTCTTGGTGGGGTTTTGGGAAGCCTTTACAACTATCTTCTCCATAAGCTCCTCCTGAGTCTCTCAGTTGCAATCTTCACATCAGTGTGCCAATATGGCCTCCCATTCCTTGCAAAATGCACCCCTTGTGATCCCTCCTTCCCAGATGTCTGCCCCACGAACGGCCGCGCTGGAAACTTCAAACAATTCAACTGTCCAAACGGCCACTACAACGATCTTGCCACTCTTCTCCTCACCACCAACGATGATGCAGTGAGAAACATCTTCTCAACCAACACCCCTCTTGAATACCAACCCTCCTCCATCATAATCTTCTTTGCACTCTATTGTATACTAGGCCTAATCACCTTTGGCATTGCAGTGCCATCAGGGCTCTTCCTCCCCATCATCCTCATGGGCTCCGGCTACGGCCGCCTCCTTGGGATCCTAATGAGGCCCCACACCAACATTGATCAAGGACTCTTTGCAGTTCTTGGTGCAGCCTCACTCATGGCTGGTTCAATGAGAATGACAGTGTCACTTTGTGTGATCTTCCTTGAACTAACAAACAACCTTTTACTTCTACCAATAACAATGATTGTTCTCCTCATAGGCAAAACTGTTGGAGACAGCTTCAACCCAAGCATCTATGAGATCATCCTCCACCTCAAGGGCCTTCCTTTTATGGATGCAAACCCTGAGCCATGGATGAGAAACCTCACTGTGGGAGAGCTTGTTGATGTGAAGCCATCAGTGGTTGGCTTCAGAGGAGTTGAGAAAGTTGCCAACATTGTCAATGCCTTGAGGAACACTACACATAATGGTTTTCCTGTGATGGATTGTGGAGTGGTGGTGGCTAATGAGTCAATAGAACTTCATGGACTCATTTTGAGAGCACACCTTATCCAAGTGTTGAAGAAGAAGTGGTTCTTGAAGGAGAGAAGGAGAACTGAGGAGTGGGAAGTCAGGGAGAAGTTTACATGGGTGGAGCTTGCTGAGAGAGAAGGGAACATTGAAGATGTGCCTGTGACTAAAGAGGAGATGGAGATGTTTGTTGATCTTCATCCTCTCACCAATACGACGCCGTTTACAGTGTTAGAGAGGTTTGGTGTTCTCGCTCCTCTCTTTGGCCTCCAACTTCCCATGGCCTACCATGGAATTACCTTAGACCACCGCCCCTGGCTGTTGTCCCTTCCGATGTTGCCACACTTGCATGTTTCCAAGACGCCGCGCAATTGCACGCCGCTACCTTATAGTGCGTCGCCGCACAATTGCACTTCGTCGATTTGTAGTGTGCCGCCATGGAGTAGACAAATACTACCACCTTCGTGTTAG 1797 0.483 MYDSDNHDQIIGSIGAVAAGLDLGKEGPLVHIGSCIASILGQGGPDNYRIKWRWIRYFNNDRDRRDLITCGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLRATIELCHKGKCGLFGEGGLIMFDVSDVTVRYNVMDIIPVVIIGVLGGVLGSLYNYLLHKLLLSLSVAIFTSVCQYGLPFLAKCTPCDPSFPDVCPTNGRAGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSTNTPLEYQPSSIIIFFALYCILGLITFGIAVPSGLFLPIILMGSGYGRLLGILMRPHTNIDQGLFAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIGKTVGDSFNPSIYEIILHLKGLPFMDANPEPWMRNLTVGELVDVKPSVVGFRGVEKVANIVNALRNTTHNGFPVMDCGVVVANESIELHGLILRAHLIQVLKKKWFLKERRRTEEWEVREKFTWVELAEREGNIEDVPVTKEEMEMFVDLHPLTNTTPFTVLERFGVLAPLFGLQLPMAYHGITLDHRPWLLSLPMLPHLHVSKTPRNCTPLPYSASPHNCTSSICSVPPWSRQILPPSC 598
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1239 598 SUPERFAMILY CBS-domain pair 387 523 IPR046342 -
Aed3g1239 598 Gene3D Clc chloride channel 9 385 - -
Aed3g1239 598 PANTHER CHLORIDE CHANNEL PROTEIN 9 525 - -
Aed3g1239 598 Pfam Voltage gated chloride channel 9 363 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Aed3g1239 598 SUPERFAMILY Clc chloride channel 10 385 IPR014743 -
Aed3g1239 598 PRINTS Chloride channel signature 73 92 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Aed3g1239 598 PRINTS Chloride channel signature 282 302 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Aed3g1239 598 PRINTS Chloride channel signature 332 351 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Aed3g1239 598 PRINTS Chloride channel signature 9 28 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Aed3g1239 598 PRINTS Chloride channel signature 314 330 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Aed3g1239 598 PRINTS Chloride channel signature 370 384 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Aed3g1239 598 PRINTS Plant CLC chloride channel signature 94 102 IPR002251 GO:0005247|GO:0006821|GO:0016020
Aed3g1239 598 PRINTS Plant CLC chloride channel signature 126 133 IPR002251 GO:0005247|GO:0006821|GO:0016020
Aed3g1239 598 PRINTS Plant CLC chloride channel signature 108 118 IPR002251 GO:0005247|GO:0006821|GO:0016020
Aed3g1239 598 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 9 525 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Aed3g1239 Aed-Chr3 11002112 11007028 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1239 9 529 Ion Channels AT5G40890 77.467 0.0 831
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1239 K05016 - gmx:778094 915.605
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g1213 9 9452649 9456750 Aed3g1239 3 11002112 11007028 PCT