Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1220 ATGAAGAGGGAGAGGGAACTCATGGGTTTAATGAGCTTGTGGGGTATTTTTGTGTTTGTGGATGCAGAATTGGAGGAAGTGGGGTATCTGGGTCTGACTCAACTTTCTTTTCCTGCAAGGGTCTTCTTTTGCCAGGCAAAATCTGGCATAGACAGATCCTTGAATTTAAAAGTGGTGTCTCCGACTCTGTTAGTAGCAGAAAAGGAAGAAGCCAAGGCTGTGTTGACCTTGTTTTTGAAGAAACAAGGCTTGAGCAATGCAATTGCTGCTAGAACCAGCAACAAGTCAGATCATTTTATCGATCACCTTGTCTCAACGCTTCACTCTAAACACAAATCTTGGTATCTCGCAGGGAGAGAGCTTACAACTCTGGAGATCAGGGACGTGCTTATCCCTTATCTTGAATCTCTTTTTGAAGAGCATGGAGACATTCTAGTGGATGTAGTGGAAAACTATCCAAATCCACCTGTTAAGGATAAATCAGCTGTGCCGGTTCCTCCTTCTAATCCAGTGTTAGACTCTAAGAAGCTTAAAGCGGTGTCTCGAGTGAGTGAGGTAGACCCAGATGGTGTCAATCTTCGCCCTCATATTGTCTATCTCATCGAACTTGGTATGGATATTGAGCAGATTAGGAGTATCACACGACGATTCCCATCTTTTGCCTACTATAGCTTGGAGGGTAAAATTAAGCCAGTGGTTGAGTTTTTTCTAGAACTTGGAGTGCCAAAAGAGAACATCCCCACTATCCTCACTAAAAGGCCTCAATTATGTGGAATCAGTCTATCTGAAAATCTTAAACCCACCATGAAGTTCTTTGAATCTTTGGGTGTTGACAAGAACCAATGGCCAAAGGTGATCTATCGTTTCCCAGCACTGCTAACTTACAGCAGGCCGAAAGTGATGGAAAGCATAGATTTTCTCCTTGAATTAGGCCTCTCAGAAGAGAGTATAGGTAAGATTTTAACTCGCTGCCCCAATATTGTTAGTTACAGTGTAGAGGACAATCTCCGACCCACGGCTAAGTACTTCCGTTCTTTGGGGGTTGATGTTGGTATTCTTCTCTTCAGATGCCCTCAGAATTTTGGTCTTAGCATTGAGACCAACCTAAAGCCTGTAACCGAGTTTTTCTTGGAGAGGGGATACACTTTGGAAGAAATTGGGACCATGATTTCAAGATATGGAGCCTTGTATACTTTCAGCTTGACTGAAAATTTGATTCCAAAATGGGATTTCTTTTTGACCATAGGTTACCCGAAATCTGAGTTGGTTAAGTTCCCTCAATATTTTGGATACAATTTAGAGGAAAGGATTAAACCTAGATTCGCAATTATGAAAGAATCTGGAGTAAAGTTACTGCTGAACCAGGTTCTTTCACTGTCAAGCAGCAACTTTGTCGAAGCCTTGAAAAAGAAAATGAAGAAAATGCAAGTTAGTTAG 1437 0.4175 MKRERELMGLMSLWGIFVFVDAELEEVGYLGLTQLSFPARVFFCQAKSGIDRSLNLKVVSPTLLVAEKEEAKAVLTLFLKKQGLSNAIAARTSNKSDHFIDHLVSTLHSKHKSWYLAGRELTTLEIRDVLIPYLESLFEEHGDILVDVVENYPNPPVKDKSAVPVPPSNPVLDSKKLKAVSRVSEVDPDGVNLRPHIVYLIELGMDIEQIRSITRRFPSFAYYSLEGKIKPVVEFFLELGVPKENIPTILTKRPQLCGISLSENLKPTMKFFESLGVDKNQWPKVIYRFPALLTYSRPKVMESIDFLLELGLSEESIGKILTRCPNIVSYSVEDNLRPTAKYFRSLGVDVGILLFRCPQNFGLSIETNLKPVTEFFLERGYTLEEIGTMISRYGALYTFSLTENLIPKWDFFLTIGYPKSELVKFPQYFGYNLEERIKPRFAIMKESGVKLLLNQVLSLSSSNFVEALKKKMKKMQVS 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1220 478 SMART mt_12 283 313 IPR003690 GO:0003690|GO:0006355
Aed3g1220 478 SMART mt_12 387 418 IPR003690 GO:0003690|GO:0006355
Aed3g1220 478 SMART mt_12 318 349 IPR003690 GO:0003690|GO:0006355
Aed3g1220 478 SMART mt_12 419 450 IPR003690 GO:0003690|GO:0006355
Aed3g1220 478 SMART mt_12 211 242 IPR003690 GO:0003690|GO:0006355
Aed3g1220 478 SMART mt_12 351 382 IPR003690 GO:0003690|GO:0006355
Aed3g1220 478 SMART mt_12 247 278 IPR003690 GO:0003690|GO:0006355
Aed3g1220 478 PANTHER CGI-12 PROTEIN-RELATED 31 476 IPR003690 GO:0003690|GO:0006355
Aed3g1220 478 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF5, CHLOROPLASTIC 31 476 - -
Aed3g1220 478 Gene3D Transcription termination factor 3, mitochondrial 253 475 IPR038538 -
Aed3g1220 478 Pfam mTERF 199 378 IPR003690 GO:0003690|GO:0006355
Aed3g1220 478 Pfam mTERF 356 464 IPR003690 GO:0003690|GO:0006355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Aed3g1220 mTERF 1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1220 K15032 K12177 gmx:100781900 826.239