Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1186 ATGGTTCCATGGAACTCATTTCCATTAGAAGTGATCTACCAAGTGTTTGGTTGGTTAGCTTTCCTTTCATGGTCAGTTGCTGGCTATCCACAACTCATCTTGAATTTTCGTAGGAAAAGTGTGGTGGGATTAAGCTTGGATTATGAGATTCTGAACTTAACCAAACACTTCTCATATCTTATATACAATGCTTCCCTCTTCTTTGTCCCTGCTGTTCAGAAGCAGTATTTTGAGAAGTATGGTTATGGACAGATGATTCCTGTAGCAGCTAATGATGTTGCTTTCTCCACTCATTCACGTGGAAGTCAGAAGTTCTCCAGTTATGCCATTGCAATAGTTGTTGTAGTGTGGTTTAGTGCTGCTGTTTGTTTTTTCATAGCATTGCCTAGCCAATCTTGGCTTTGGCTAATCTCCATCTTCAAGCTTAAAGAAACTTTGCAGAACTATAAAGTTGAGGCTATGCATAATTCAAGTGGTTATGACCCTCATCAAATATTTTCCCCAGGTCAGAATGCTTTACCCTCTCCATACTATGTTCTATGTGTAGCATGTCTGGTAACTATATTCTATGATTCTATTTTAATGTGTCAACATTATGCACTATACCCTGACAACAAGAAAGGGCTTACTCCTAAAAATTCAGAAGAAATCAAGCAACCACTAGTTTGTGCAAACACTAACAAGGTCATTGACACTGAGAATGAGTGTACAGGTCCAAATATTTGTGCTGTTGACAATAGTCACATGGAAACTAATGATGAATGCCAGACATCAAATATTTTCCATGATGAAAAATTTCATACTAATGTCAATAGTGGACAGTTGTGTGAGAATCACTGTGCAACCTTTGTTGCAATGACTAGTACTGATGAAAATACTGAGGAGGAAATATATGTGGCACCAAAGATTGGCATGGAGTTTGAATCAGAAGACGATGCTTACAAATATTATGGCAACTATGCTGTCCTGAAAGGTTTCAGCATAAGAAAGGATTTCGTCAACAAAAGTAGGATAAATGGTGCAGTGGTGTCCAGAAGATACACCTGCCACCGACAGGGTTATCGTCCTAACAAAAATGGTACATACCTGAAGAAATTGAAGCAGGAAACAAGAACCGGTTGTTTGGCACACATGACTATTTCTCGTTATCCGAATGGAAAGTTTCGTGTCACTAATTTTGAAATTGAGCACAATCACGATGCACATGTTAAGATCACAAAAGAGGTTAGCTACAACTCAAGTTGA 1245 0.3847 MVPWNSFPLEVIYQVFGWLAFLSWSVAGYPQLILNFRRKSVVGLSLDYEILNLTKHFSYLIYNASLFFVPAVQKQYFEKYGYGQMIPVAANDVAFSTHSRGSQKFSSYAIAIVVVVWFSAAVCFFIALPSQSWLWLISIFKLKETLQNYKVEAMHNSSGYDPHQIFSPGQNALPSPYYVLCVACLVTIFYDSILMCQHYALYPDNKKGLTPKNSEEIKQPLVCANTNKVIDTENECTGPNICAVDNSHMETNDECQTSNIFHDEKFHTNVNSGQLCENHCATFVAMTSTDENTEEEIYVAPKIGMEFESEDDAYKYYGNYAVLKGFSIRKDFVNKSRINGAVVSRRYTCHRQGYRPNKNGTYLKKLKQETRTGCLAHMTISRYPNGKFRVTNFEIEHNHDAHVKITKEVSYNSS 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1186 414 PANTHER CYSTINOSIN-LIKE PROTEIN 1 142 - -
Aed3g1186 414 Pfam PQ loop repeat 13 68 IPR006603 -
Aed3g1186 414 Gene3D - 10 90 - -
Aed3g1186 414 PANTHER CYSTINOSIN-LIKE PROTEIN 183 226 - -
Aed3g1186 414 SMART ctns 26 57 IPR006603 -
Aed3g1186 414 PANTHER CYSTINOSIN 183 226 IPR005282 -
Aed3g1186 414 PANTHER CYSTINOSIN 1 142 IPR005282 -
Aed3g1186 414 Pfam FAR1 DNA-binding domain 315 400 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1186 Aed-Chr3 10110223 10119670 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aed3g1186 FAR1 1.1e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1186 K12386 - gmx:100794945 329.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1186 3 10110223 10119670 Aed3g1186 3 10110223 10119670 ECH