Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1167 ATGGCTCCCATTCCATGCTTCCTTGTTATTCTTTTTGCTCTTTCTCTTTCTCTTTGGACACCCACTTTTGTTTCTTCCTCAGCAGTTCAAGACGCTGAAAATTTGGGTTATTTATCATGTGGGACTGGTAACCCCATAGACGATTGTTGGCGCTGTTATTCCAATTGGGAGAACAACCGACAAAGATTGGCTGATTGTGCCATCGGATTTGGCAAGGATGCAATCGGAGGAAAAAACGGTCGAATCTACGTGGTTACAGACTCGAGCGACGATGATGCTGTAAACCCTAAACCTGGAACTCTAAGGTATGGTGCCATACAAGACGAGCCATTGTGGATAATTTTCAAAAGGGATATGGTGATAAACCTAAAACAAGAGCTTTTGGTGAACTCCTTCAAGACAATAGATGGAAGGGGTGCTAGTGTACACATTGCAAATGGGGGTTGCATCACCATACACTATGTTAGTAACATTATCATTCATGGTATTCACGTTCATGATTGCAAGCCAACGGGGAACACTAACATAAGGGACTCCCCACACCACTCAGGGTTTTGGACCCAATCGGACGGTGATGGTGTGTCCATCTTTAACTCGAAGCATGTTTGGGTTGATCATTGCTCTTTGTCTAATTGCCGTGATGGACTCATTGATGTGATTCATGGATCAACGGCCATCACCATCTCAAACAATTACATGACCCATCATGACAAGGGCACAGTGACTCCTACACACAGGACAAGGACATGCAGGTGCAGACACGGGTATTTCCATGTGGTGAACAACGACTACACTCACTGGGAAATGTACGCCATAGGCGGGAGCGCGAACCCAACCATAAATAGCCAAGGCAACAGGTTCCTTGCCCCGGACATCCGGTTCAGCAAGGAGGTGACGAAGCACGAGGATGCTCCGCAAAGCGAGTGGATGAGCTGGAACTGGCGGTCAGAGGGTGACATGTTCCTCAACGGTGCATTCTTCCGACAATCCGGCGCCGGCGCCTCCTCTTCCAGCTATGCTAGGGCTTCCAGTCTCAGTGCTAGACCTTCCTCTCTTGTTGGCTCCATCACCACCACTGCTGGTGCACTTAATTGTAGAAAGGGCAACCGTTGCTGA 1116 0.4812 MAPIPCFLVILFALSLSLWTPTFVSSSAVQDAENLGYLSCGTGNPIDDCWRCYSNWENNRQRLADCAIGFGKDAIGGKNGRIYVVTDSSDDDAVNPKPGTLRYGAIQDEPLWIIFKRDMVINLKQELLVNSFKTIDGRGASVHIANGGCITIHYVSNIIIHGIHVHDCKPTGNTNIRDSPHHSGFWTQSDGDGVSIFNSKHVWVDHCSLSNCRDGLIDVIHGSTAITISNNYMTHHDKGTVTPTHRTRTCRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPDIRFSKEVTKHEDAPQSEWMSWNWRSEGDMFLNGAFFRQSGAGASSSSYARASSLSARPSSLVGSITTTAGALNCRKGNRC 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1167 371 PANTHER PECTATE LYASE 18-RELATED 248 368 IPR045032 GO:0030570
Aed3g1167 371 PANTHER PECTATE LYASE 18-RELATED 29 239 IPR045032 GO:0030570
Aed3g1167 371 SUPERFAMILY Pectin lyase-like 44 362 IPR011050 -
Aed3g1167 371 PANTHER PECTATE LYASE 248 368 - -
Aed3g1167 371 PANTHER PECTATE LYASE 29 239 - -
Aed3g1167 371 Pfam Pectate lyase 125 241 IPR002022 -
Aed3g1167 371 PRINTS Pollen allergen Amb family signature 342 365 IPR018082 -
Aed3g1167 371 PRINTS Pollen allergen Amb family signature 66 83 IPR018082 -
Aed3g1167 371 PRINTS Pollen allergen Amb family signature 90 115 IPR018082 -
Aed3g1167 371 PRINTS Pollen allergen Amb family signature 312 336 IPR018082 -
Aed3g1167 371 PRINTS Pollen allergen Amb family signature 270 289 IPR018082 -
Aed3g1167 371 SMART amb_all 118 293 IPR002022 -
Aed3g1167 371 Gene3D - 43 364 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1167 Aed-Chr3 9749962 9752764 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1167 6 371 Polysaccharide Lyase AT5G63180 65.570 7.08e-180 504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1167 3 9749962 9752764 Aed3g1167 3 9749962 9752764 ECH