Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1135 ATGGGTCGTGCAAGAATAACTTTGAAACCCATCTCAAATGAGAGATCTCGCAAGAGCACTTTTATAAAGAGAAGTAAGTGCCTCATCAGGAAAATCAATGAATTTTCAACCTTGTGTGGAGTTGAAGCCTGTTTGATTGTATATAGTGATGATGATGATGGCAATAATATTAAACCAGTGACTTGGCCTGAAGACCCCAAAGTGTTACACTCCATCATTGAGAAATATAAGCATCAAAAGAATGAGAAACCTCCAAAGATCTTTGGTGTTCAAGACTTTGTTGAGAATAGGAAGAGCATGCTTGAAGCTGAGATTTCCAAAGTCCAAAAGCAAATCTCCAGCATCAAGTATCCATCTTGGAATCCGTGTATGGCGAGCATGGAAGAGGAGCAGCTGAGGGCCTTCATTGCTCAGGTGGATGCTAAGATTATGGCTTGTGCTCAAATATTGAAAAACAAGCATCAAAGTGAAGGTGGTGATCTTGTGGGTCAGACCAATCAACCTGATGAATCTATCTTCAAAAGCATTTGTGTTCAATCTCAGAATGAGCAACTAGGAGGAGGAGCTATCTTGCCACCACCATTGGATGTATTTCAAACAGATTGCTATAATGTGAATTTCTGA 624 0.4006 MGRARITLKPISNERSRKSTFIKRSKCLIRKINEFSTLCGVEACLIVYSDDDDGNNIKPVTWPEDPKVLHSIIEKYKHQKNEKPPKIFGVQDFVENRKSMLEAEISKVQKQISSIKYPSWNPCMASMEEEQLRAFIAQVDAKIMACAQILKNKHQSEGGDLVGQTNQPDESIFKSICVQSQNEQLGGGAILPPPLDVFQTDCYNVNF 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1135 207 Coils Coil 91 111 - -
Aed3g1135 207 PANTHER MADS BOX PROTEIN 3 151 - -
Aed3g1135 207 PANTHER PROTEIN, PUTATIVE-RELATED 3 151 - -
Aed3g1135 207 CDD MADS_SRF_like 2 65 IPR033897 GO:0000981|GO:0000987|GO:0045944
Aed3g1135 207 Gene3D - 13 101 IPR036879 GO:0003677|GO:0046983
Aed3g1135 207 ProSiteProfiles MADS-box domain profile. 1 50 IPR002100 GO:0003677|GO:0046983
Aed3g1135 207 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aed3g1135 207 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aed3g1135 207 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aed3g1135 207 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
Aed3g1135 207 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aed3g1135 207 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1135 Aed-Chr3 9314024 9315103 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1135 1 156 Type I MADS-box Gene Family AT5G55690 33.544 3.73e-23 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aed3g1135 SRF-TF 1.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1135 - - gmx:106797420 219.164