Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1093 ATGGAACCTGAATTCTCTTCTGTTCAACGTCAGAATGTGAACGATGTTGTTGCCAGTGGAGAGAAACTAAAGTGTTCGGATTCTCCTGGAGTTCAAATAGAGGGAAGCAAAATCAAGGATCCTGCAAATGAAGAAAAATCTTGCCACCAGATTTTGAGGTTTGTTTGGATGATAACATTTTTGTTTGCTTGGTTTTCAATGTTGAAGTGCCGGCAAAAAAGACCAAAAGTAGACCTAGTTGATAATTGCCAGAATTTAAAGAAAGGGAAACCTTGTACCATGGGGTTCTGCCCCGCATGCCTCTCGAACAGGAAAAGCCGAGGTCAACTACCTACTGGTCCCCTATATCGTAATGCCAAGGAATCTGGTTTTAAGTCTGTTTTAGACATGCTCTCTGCGCAGAAAGTTTCTAAAGCTTTGGAGTCAAACAAGTTCAATGATGTTGCTATTTTACCTTCAAATGAAGCTACTGTGCAAAAGTTTTTGGCATACAAGTTTTACTCATTTGGTGCACAGGGTTTATATGCATGTGTGCGTGCGCTTATGGAACTCGAAGCCCTTCTCCCAGGAAATGCAAATGATGTTGCTAAAGTTATGAACTTAGTGAGAGAAAAAACCAAAAAGGAAATTCATTTGCCCCTTGGCACCAAGTTAACAGAAATATTGAGCATTGAGTTACCTTCTGAAGATGTTGGGAATGCATTGCAGTTTCTAGAGTTTTGCAGAGTGTTTGGAAAGGCTCTTGATCTCAAGGAAGGAGAAGTTGAAGCCATGTTACAAGAATTAGTATGTAAGCAAAATTTGTGTGGAGGACGAAACACCTTAGTGGTTCAGTTTCAAATTAGAGTGTTGGCCCTGATACTAAATGATTCAGGAAATGAGTCACCTTCATTGACTGATAACAGTGGATATAACTCATGGTTAAAACCACTGGAGGATTTAATTACTAAATCAAATCTTTTATTAAAAGATTTTCCTTTGGAATGGCTTCCAAAAGGAATTGGTGGATACGGCAATTTGAGTTTGTCAAATAAGCTTAAACTGTTGAACTTTCTGTGTGATGAAGCGCTAGGCACTGAGAAACTGAGGAATTATATTCAGGATGGAAATTCAATTCATGCCGAAGAAGTAAAAGCAGCAAAATTCAAGGTTGCTGTTGTTATGGAAAAGGAAAAGGGTCTTAGGCAAAAGTTGCAAAATGAGATGGCTAAAGTTGTTCTGTCAAATGTGGCTCCTCTTTCAATGGAAGAGCATGATGTTCTTATTTCAGAGATGAAAAGTGAAGTGGCTGAAGCTCATGCTGAGGTGCTCAAGTTAAAGGGCACAATTCCAAAAGGGAAGCGTAGTTCCAATGCTTCAAGAATTGAACCTGAGTTTTTGGACAACAACGGTCAGACATTTTGGAAATTAAAAAGTTATGATGGTGAAAATGCTGTTCTGTTGCAAGATATCAAAATACAGGATGAAACTGGTACTGCACCTGATGAAAAATGGTTTGTCTATGGTCCTGAGAAGAATGATGAGGTTGATGAGTACATTTCCTCAAGGTTTTGGTGGGAGTCTTATACTCTCCATCAAATGCTGGAAGATGCTGAAGTTGCTGATGAAGCAGGAAGCTAA 1620 0.392 MEPEFSSVQRQNVNDVVASGEKLKCSDSPGVQIEGSKIKDPANEEKSCHQILRFVWMITFLFAWFSMLKCRQKRPKVDLVDNCQNLKKGKPCTMGFCPACLSNRKSRGQLPTGPLYRNAKESGFKSVLDMLSAQKVSKALESNKFNDVAILPSNEATVQKFLAYKFYSFGAQGLYACVRALMELEALLPGNANDVAKVMNLVREKTKKEIHLPLGTKLTEILSIELPSEDVGNALQFLEFCRVFGKALDLKEGEVEAMLQELVCKQNLCGGRNTLVVQFQIRVLALILNDSGNESPSLTDNSGYNSWLKPLEDLITKSNLLLKDFPLEWLPKGIGGYGNLSLSNKLKLLNFLCDEALGTEKLRNYIQDGNSIHAEEVKAAKFKVAVVMEKEKGLRQKLQNEMAKVVLSNVAPLSMEEHDVLISEMKSEVAEAHAEVLKLKGTIPKGKRSSNASRIEPEFLDNNGQTFWKLKSYDGENAVLLQDIKIQDETGTAPDEKWFVYGPEKNDEVDEYISSRFWWESYTLHQMLEDAEVADEAGS 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1093 539 SMART testlast3 228 293 IPR018501 -
Aed3g1093 539 PANTHER OS05G0300700 PROTEIN 18 104 - -
Aed3g1093 539 PANTHER OS05G0300700 PROTEIN 104 515 - -
Aed3g1093 539 PANTHER OS05G0300700 PROTEIN 18 104 IPR040221 GO:0006355
Aed3g1093 539 PANTHER OS05G0300700 PROTEIN 104 515 IPR040221 GO:0006355
Aed3g1093 539 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 335 366 IPR028942 -
Aed3g1093 539 ProSiteProfiles DDT domain profile. 228 293 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1093 Aed-Chr3 8650061 8655387 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Aed3g1093 WHIM1 6.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1093 - - gmx:100780800 455.677